RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 CLCA3PQ9Y6N3 262 aa11.48□□□□□ -0.57
CIITA-212ENST00000618207 CEP192Q8TEP8 1941 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 A0A1W2PR77 199 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 CLDN4O14493 209 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 MRPL3P09001 348 aaKnown RBP11.47□□□□□ -0.57
CIITA-212ENST00000618207 CLEC2LP0C7M8 214 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 BMP7P18075 431 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 S1PR1P21453 382 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 CAV3P56539 151 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 FXYD6P3P58550 94 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 INSL4Q14641 139 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 PRTGQ2VWP7 1150 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.47□□□□□ -0.57
CIITA-212ENST00000618207 PTCRAQ6ISU1 281 aaPredicted RBP11.47□□□□□ -0.57
CIITA-212ENST00000618207 ZNF321PQ8N8H1 164 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 POGLUT1Q8NBL1 392 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 PROKR2Q8NFJ6 384 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 OR4C3Q8NH37 302 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 C16orf52Q8NHV5 167 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 HTRA1Q92743 480 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 BPIFA2Q96DR5 249 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 CD180Q99467 661 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 IFT27Q9BW83 186 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 TAPBPLQ9BX59 468 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 MMP27Q9H306 513 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 MRPS33Q9Y291 106 aaKnown RBP11.47□□□□□ -0.57
CIITA-212ENST00000618207 LINC00854A0A1B0GVQ3 168 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 UNC119BA6NIH7 251 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 C10orf142B7Z368 130 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 REM1O75628 298 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 SERPINI2O75830 405 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 LALBAP00709 142 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 THBS1P07996 1170 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 CLUP10909 449 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 SOX6P35712 828 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 UGT2B10P36537 528 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 STAT5AP42229 794 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 CRYBB2P43320 205 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 CCR4P51679 360 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 RPS25P62851 125 aaKnown RBP11.47□□□□□ -0.57
CIITA-212ENST00000618207 EFNB1P98172 346 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 TIMM50Q3ZCQ8 353 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 DESI1Q6ICB0 168 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 NPSR1Q6W5P4 371 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 SLC22A16Q86VW1 577 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 CHPT1Q8WUD6 406 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 TCTN2Q96GX1 697 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 CEP19Q96LK0 163 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 SECISBP2Q96T21 854 aaKnown RBP11.47□□□□□ -0.57
CIITA-212ENST00000618207 STACQ99469 402 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 NDEL1Q9GZM8 345 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 TBC1D17Q9HA65 648 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 TMEM27Q9HBJ8 222 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 PDE7BQ9NP56 450 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 MEPEQ9NQ76 525 aaPredicted RBP11.47□□□□□ -0.57
CIITA-212ENST00000618207 FLRT3Q9NZU0 649 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 ZNF229Q9UJW7 825 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 FBXL4Q9UKA2 621 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 DIMT1Q9UNQ2 313 aaKnown RBP11.47□□□□□ -0.57
CIITA-212ENST00000618207 TMEM131Q92545 1883 aa11.47□□□□□ -0.57
CIITA-212ENST00000618207 CDC14CA4D256 554 aa11.46□□□□□ -0.57
CIITA-212ENST00000618207 SLC35F4A4IF30 521 aa11.46□□□□□ -0.57
CIITA-212ENST00000618207 CHURC1-FNTBB4DL54 471 aa11.46□□□□□ -0.57
CIITA-212ENST00000618207 CDRT1O95170 752 aa11.46□□□□□ -0.57
CIITA-212ENST00000618207 CD40LGP29965 261 aa11.46□□□□□ -0.57
CIITA-212ENST00000618207 FASLGP48023 281 aa11.46□□□□□ -0.57
CIITA-212ENST00000618207 FNTBP49356 437 aa11.46□□□□□ -0.57
CIITA-212ENST00000618207 RACK1P63244 317 aaKnown RBP11.46□□□□□ -0.57
CIITA-212ENST00000618207 KLHL22Q53GT1 634 aa11.46□□□□□ -0.57
CIITA-212ENST00000618207 TSSK4Q6SA08 328 aa11.46□□□□□ -0.57
CIITA-212ENST00000618207 Q7L0L9 218 aa11.46□□□□□ -0.57
CIITA-212ENST00000618207 PRR22Q8IZ63 422 aa11.46□□□□□ -0.57
CIITA-212ENST00000618207 FGF11Q92914 225 aa11.46□□□□□ -0.57
CIITA-212ENST00000618207 NELL2Q99435 816 aa11.46□□□□□ -0.57
CIITA-212ENST00000618207 ERVK13-1Q9NX77 482 aa11.46□□□□□ -0.57
CIITA-212ENST00000618207 SSR3Q9UNL2 185 aa11.46□□□□□ -0.57
CIITA-212ENST00000618207 CDH10Q9Y6N8 788 aa11.46□□□□□ -0.57
CIITA-212ENST00000618207 A0A1B0GWA3 101 aa11.46□□□□□ -0.58
CIITA-212ENST00000618207 FUOMA2VDF0 154 aa11.46□□□□□ -0.58
CIITA-212ENST00000618207 NKX2-2O95096 273 aa11.46□□□□□ -0.58
CIITA-212ENST00000618207 LIMS3P0CW19 117 aa11.46□□□□□ -0.58
CIITA-212ENST00000618207 LIMS4P0CW20 117 aa11.46□□□□□ -0.58
CIITA-212ENST00000618207 AZGP1P25311 298 aaKnown RBP11.46□□□□□ -0.58
CIITA-212ENST00000618207 CD1CP29017 333 aa11.46□□□□□ -0.58
CIITA-212ENST00000618207 NOS3P29474 1203 aa11.46□□□□□ -0.58
CIITA-212ENST00000618207 BMP8BP34820 402 aa11.46□□□□□ -0.58
CIITA-212ENST00000618207 ARL4DP49703 201 aa11.46□□□□□ -0.58
CIITA-212ENST00000618207 GAS1P54826 345 aa11.46□□□□□ -0.58
CIITA-212ENST00000618207 WNT4P56705 351 aa11.46□□□□□ -0.58
CIITA-212ENST00000618207 RELAQ04206 551 aa11.46□□□□□ -0.58
CIITA-212ENST00000618207 CD300CQ08708 224 aa11.46□□□□□ -0.58
CIITA-212ENST00000618207 CRTC2Q53ET0 693 aaPredicted RBP11.46□□□□□ -0.58
CIITA-212ENST00000618207 ALG10BQ5I7T1 473 aa11.46□□□□□ -0.58
CIITA-212ENST00000618207 FAM209AQ5JX71 171 aa11.46□□□□□ -0.58
CIITA-212ENST00000618207 C1orf189Q5VU69 101 aa11.46□□□□□ -0.58
CIITA-212ENST00000618207 SHISA6Q6ZSJ9 500 aa11.46□□□□□ -0.58
CIITA-212ENST00000618207 CXXC5Q7LFL8 322 aaKnown RBP11.46□□□□□ -0.58
CIITA-212ENST00000618207 LAPTM4BQ86VI4 370 aa11.46□□□□□ -0.58
CIITA-212ENST00000618207 ARHGEF39Q8N4T4 335 aa11.46□□□□□ -0.58
CIITA-212ENST00000618207 PARP16Q8N5Y8 322 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms