RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 DUX1O43812 170 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 SERPINB10P48595 397 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 ARL4DP49703 201 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 ATP12AP54707 1039 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 CDH11P55287 796 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 ITGADQ13349 1161 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 FGFBP1Q14512 234 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 C1orf189Q5VU69 101 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 LIPKQ5VXJ0 399 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 ZNF613Q6PF04 617 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 KIRREL2Q6UWL6 708 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 USP43Q70EL4 1123 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 PLXDC1Q8IUK5 500 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 CPOQ8IVL8 374 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 D2HGDHQ8N465 521 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 GATSQ8NAP1 163 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 OR51A7Q8NH64 312 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 MCFD2Q8NI22 146 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 FANK1Q8TC84 345 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 OTULINQ96BN8 352 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 HS6ST2Q96MM7 605 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 ELF4Q99607 663 aaPredicted RBP13.33□□□□□ -0.28
VRK3-217ENST00000599538 ZNF559Q9BR84 538 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 HCAR1Q9BXC0 346 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 FBXO8Q9NRD0 319 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 MUTYHQ9UIF7 546 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 SIGLEC7Q9Y286 467 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 ASCC3Q8N3C0 2202 aaKnown RBP13.33□□□□□ -0.28
VRK3-217ENST00000599538 BHLHE40O14503 412 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 MYL12BO14950 172 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 CHP2O43745 196 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 LIMS3P0CW19 117 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 LIMS4P0CW20 117 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 SLC37A1P57057 533 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 IFITM3Q01628 133 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 RNLSQ5VYX0 342 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 FCRLBQ6BAA4 426 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 LHFPL3Q86UP9 236 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 LAPTM4BQ86VI4 370 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 PHC2Q8IXK0 858 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 RNF113BQ8IZP6 322 aaKnown RBP13.33□□□□□ -0.28
VRK3-217ENST00000599538 CADM2Q8N3J6 435 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 BRIX1Q8TDN6 353 aaKnown RBP13.33□□□□□ -0.28
VRK3-217ENST00000599538 OR8D2Q9GZM6 311 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 FGF20Q9NP95 211 aaPredicted RBP13.33□□□□□ -0.28
VRK3-217ENST00000599538 ATXN7L1Q9ULK2 861 aaPredicted RBP13.33□□□□□ -0.28
VRK3-217ENST00000599538 YARS2Q9Y2Z4 477 aaKnown RBP13.33□□□□□ -0.28
VRK3-217ENST00000599538 MED31Q9Y3C7 131 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 SAGP10523 405 aaPredicted RBP13.32□□□□□ -0.28
VRK3-217ENST00000599538 CRYBB2P43320 205 aa13.32□□□□□ -0.28
VRK3-217ENST00000599538 DHPSP49366 369 aaPredicted RBP13.32□□□□□ -0.28
VRK3-217ENST00000599538 TUBA1BP68363 451 aa13.32□□□□□ -0.28
VRK3-217ENST00000599538 RAB40BQ12829 278 aa13.32□□□□□ -0.28
VRK3-217ENST00000599538 TMED1Q13445 227 aa13.32□□□□□ -0.28
VRK3-217ENST00000599538 SERTAD2Q14140 314 aa13.32□□□□□ -0.28
VRK3-217ENST00000599538 INAQ16352 499 aa13.32□□□□□ -0.28
VRK3-217ENST00000599538 C11orf91Q3C1V1 193 aa13.32□□□□□ -0.28
VRK3-217ENST00000599538 KLHL22Q53GT1 634 aa13.32□□□□□ -0.28
VRK3-217ENST00000599538 ALG10BQ5I7T1 473 aa13.32□□□□□ -0.28
VRK3-217ENST00000599538 TMPRSS11FQ6ZWK6 438 aa13.32□□□□□ -0.28
VRK3-217ENST00000599538 TUBA1AQ71U36 451 aa13.32□□□□□ -0.28
VRK3-217ENST00000599538 CLDN22Q8N7P3 220 aa13.32□□□□□ -0.28
VRK3-217ENST00000599538 GATAD2BQ8WXI9 593 aa13.32□□□□□ -0.28
VRK3-217ENST00000599538 SLC41A2Q96JW4 573 aa13.32□□□□□ -0.28
VRK3-217ENST00000599538 KLHDC3Q9BQ90 382 aa13.32□□□□□ -0.28
VRK3-217ENST00000599538 ZNF426Q9BUY5 554 aa13.32□□□□□ -0.28
VRK3-217ENST00000599538 NXF5Q9H1B4 397 aaKnown RBP13.32□□□□□ -0.28
VRK3-217ENST00000599538 EXOSC4Q9NPD3 245 aaKnown RBP13.32□□□□□ -0.28
VRK3-217ENST00000599538 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.32□□□□□ -0.28
VRK3-217ENST00000599538 IGKV3D-11A0A0A0MRZ8 115 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 LRRN3E7EW58 273 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 OIP5O43482 229 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 FHL1Q13642 323 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 ZNF846Q147U1 533 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 CD226Q15762 336 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 ZNF404Q494X3 552 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 C3orf38Q5JPI3 329 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 PLBD1Q6P4A8 553 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 MED25Q71SY5 747 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 TMEM203Q969S6 136 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 CCDC74AQ96AQ1 378 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 ZNF524Q96C55 264 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 ZNF649Q9BS31 505 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 NRSN2Q9GZP1 204 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 LRRN3Q9H3W5 708 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 ERVMER34-1Q9H9K5 563 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 KRCC1Q9NPI7 259 aaPredicted RBP13.31□□□□□ -0.28
VRK3-217ENST00000599538 QPCTLQ9NXS2 382 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 GMEB2Q9UKD1 530 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 MN1Q10571 1320 aaPredicted RBP13.31□□□□□ -0.28
VRK3-217ENST00000599538 MPDZO75970 2070 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 ADAMTS20P59510 1910 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 SOX30O94993 753 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 LALBAP00709 142 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 CSTAP01040 98 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 GUSBP08236 651 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 MLLT11Q13015 90 aaPredicted RBP13.31□□□□□ -0.28
VRK3-217ENST00000599538 ZNF362Q5T0B9 420 aaPredicted RBP13.31□□□□□ -0.28
VRK3-217ENST00000599538 APOOLQ6UXV4 268 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 ZNF574Q6ZN55 896 aaPredicted RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms