RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 C9orf106Q8NAJ2 232 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 GOLM1Q8NBJ4 401 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 OR52R1Q8NGF1 315 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 MS4A4EQ96PG1 132 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 BTBD10Q9BSF8 475 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 REG4Q9BYZ8 158 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 PLA2G12AQ9BZM1 189 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 OR10A5Q9H207 317 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 SERHL2Q9H4I8 314 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 DDX18Q9NVP1 670 aaKnown RBP12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 CMTM6Q9NX76 183 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 TMEM181Q9P2C4 612 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 ABCD2Q9UBJ2 740 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 USF3Q68DE3 2245 aa12.56□□□□□ -0.4
SHKBP1-218ENST00000598907 COQ9O75208 318 aa12.56□□□□□ -0.4
SHKBP1-218ENST00000598907 SOX30O94993 753 aa12.56□□□□□ -0.4
SHKBP1-218ENST00000598907 HMGN2P05204 90 aaKnown RBP12.56□□□□□ -0.4
SHKBP1-218ENST00000598907 BMP2P12643 396 aa12.56□□□□□ -0.4
SHKBP1-218ENST00000598907 RASSF2P50749 326 aa12.56□□□□□ -0.4
SHKBP1-218ENST00000598907 GZMMP51124 257 aa12.56□□□□□ -0.4
SHKBP1-218ENST00000598907 RGNQ15493 299 aa12.56□□□□□ -0.4
SHKBP1-218ENST00000598907 SPDYE7PQ495Y7 208 aa12.56□□□□□ -0.4
SHKBP1-218ENST00000598907 RABL3Q5HYI8 236 aa12.56□□□□□ -0.4
SHKBP1-218ENST00000598907 MFSD12Q6NUT3 480 aa12.56□□□□□ -0.4
SHKBP1-218ENST00000598907 HSDL2Q6YN16 418 aa12.56□□□□□ -0.4
SHKBP1-218ENST00000598907 ASRGL1Q7L266 308 aa12.56□□□□□ -0.4
SHKBP1-218ENST00000598907 C10orf111Q8N326 155 aa12.56□□□□□ -0.4
SHKBP1-218ENST00000598907 OR8K3Q8NH51 312 aa12.56□□□□□ -0.4
SHKBP1-218ENST00000598907 TIMP4Q99727 224 aa12.56□□□□□ -0.4
SHKBP1-218ENST00000598907 SH3GL1Q99961 368 aa12.56□□□□□ -0.4
SHKBP1-218ENST00000598907 OR8D2Q9GZM6 311 aa12.56□□□□□ -0.4
SHKBP1-218ENST00000598907 KAT8Q9H7Z6 458 aaKnown RBP12.56□□□□□ -0.4
SHKBP1-218ENST00000598907 ZFP64Q9NPA5 681 aa12.56□□□□□ -0.4
SHKBP1-218ENST00000598907 GIN1Q9NXP7 522 aa12.56□□□□□ -0.4
SHKBP1-218ENST00000598907 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.56□□□□□ -0.4
SHKBP1-218ENST00000598907 DOCK7Q96N67 2140 aa12.56□□□□□ -0.4
SHKBP1-218ENST00000598907 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.55□□□□□ -0.42e-8■■■□□ 17.7
SHKBP1-218ENST00000598907 MBD3L3A6NE82 208 aaPredicted RBP12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 OR6C76A6NM76 312 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 NME4O00746 187 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 CHI3L1P36222 383 aaPredicted RBP12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 PRKAG1P54619 331 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 MTPNP58546 118 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 TXNL4AP83876 142 aaKnown RBP12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 MXRA7P84157 204 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 FADDQ13158 208 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 TP53BP2Q13625 1128 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 COX20Q5RI15 118 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 CDC73Q6P1J9 531 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 OPN5Q6U736 354 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 RNF111Q6ZNA4 994 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 CALHM3Q86XJ0 350 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 RNF130Q86XS8 419 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 C9orf40Q8IXQ3 194 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 DEFB107AQ8IZN7 70 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 GCNT2Q8N0V5 402 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 MBD3L2Q8NHZ7 208 aaPredicted RBP12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 C16orf58Q96GQ5 468 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 ZC3HAV1LQ96H79 300 aaKnown RBP12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 SLC35G5Q96KT7 338 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 SGCZQ96LD1 299 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 VSTM2LQ96N03 204 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 WFIKKN1Q96NZ8 548 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 LMF2Q9BU23 707 aaKnown RBP12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 MED18Q9BUE0 208 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 ACTRT3Q9BYD9 372 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 LRMDAQ9H2I8 198 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 RAD21L1Q9H4I0 556 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 CXorf56Q9H5V9 222 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 FOLH1BQ9HBA9 442 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 ACKR4Q9NPB9 350 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 PRODH2Q9UF12 536 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 BCAP29Q9UHQ4 241 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 CDC42EP3Q9UKI2 254 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 CORO2BQ9UQ03 480 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 CFL2Q9Y281 166 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 DTX4Q9Y2E6 619 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 AP3M1Q9Y2T2 418 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 SLC6A5Q9Y345 797 aa12.55□□□□□ -0.4
SHKBP1-218ENST00000598907 CD8B2A6NJW9 211 aa12.54□□□□□ -0.4
SHKBP1-218ENST00000598907 TTC36A6NLP5 189 aa12.54□□□□□ -0.4
SHKBP1-218ENST00000598907 EVPLLA8MZ36 301 aa12.54□□□□□ -0.4
SHKBP1-218ENST00000598907 GYG2O15488 501 aa12.54□□□□□ -0.4
SHKBP1-218ENST00000598907 GSC2O15499 205 aa12.54□□□□□ -0.4
SHKBP1-218ENST00000598907 NME6O75414 186 aaPredicted RBP12.54□□□□□ -0.4
SHKBP1-218ENST00000598907 TNFRSF21O75509 655 aa12.54□□□□□ -0.4
SHKBP1-218ENST00000598907 TRAPPC6AO75865 159 aa12.54□□□□□ -0.4
SHKBP1-218ENST00000598907 NKX2-2O95096 273 aa12.54□□□□□ -0.4
SHKBP1-218ENST00000598907 IL18BPO95998 194 aa12.54□□□□□ -0.4
SHKBP1-218ENST00000598907 ACP2P11117 423 aa12.54□□□□□ -0.4
SHKBP1-218ENST00000598907 MATN1P21941 496 aa12.54□□□□□ -0.4
SHKBP1-218ENST00000598907 PRIM2P49643 509 aa12.54□□□□□ -0.4
SHKBP1-218ENST00000598907 SLC7A2P52569 658 aa12.54□□□□□ -0.4
SHKBP1-218ENST00000598907 PSG6Q00889 435 aa12.54□□□□□ -0.4
SHKBP1-218ENST00000598907 LASP1Q14847 261 aaKnown RBP12.54□□□□□ -0.4
SHKBP1-218ENST00000598907 EBPQ15125 230 aaKnown RBP12.54□□□□□ -0.4
SHKBP1-218ENST00000598907 DNAL1Q4LDG9 190 aa12.54□□□□□ -0.4
SHKBP1-218ENST00000598907 DCST1Q5T197 706 aa12.54□□□□□ -0.4
SHKBP1-218ENST00000598907 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms