RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 PPIBP23284 216 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 ACVR2AP27037 513 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 SHC1P29353 583 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 NUP107P57740 925 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 HPCAP84074 193 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 CDK6Q00534 326 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 PMPCAQ10713 525 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 GANABQ14697 944 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 RPTNQ6XPR3 784 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 EIF3MQ7L2H7 374 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 CALHM3Q86XJ0 350 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 ZZZ3Q8IYH5 903 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 GTPBP8Q8N3Z3 284 aaPredicted RBP12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 OR52P1PQ8NH57 321 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 OR5W2Q8NH69 310 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 RP9Q8TA86 221 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 SSC4DQ8WTU2 575 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 ITLN2Q8WWU7 325 aaPredicted RBP12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 RNF145Q96MT1 663 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 PSMG3-AS1Q96PY0 264 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 TUBA1CQ9BQE3 449 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 TTYH2Q9BSA4 534 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 TP63Q9H3D4 680 aaPredicted RBP12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 PIF1Q9H611 641 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 TMEM38AQ9H6F2 299 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 THUMPD1Q9NXG2 353 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 DNAJB12Q9NXW2 375 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 MED12Q93074 2177 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 A0A087WZY1 265 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 BBIP1A8MTZ0 92 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 AP3D1O14617 1153 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 TPST1O60507 370 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 DBIP07108 87 aaKnown RBP12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 ESRRAP11474 423 aaPredicted RBP12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 NID1P14543 1247 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 SLC6A2P23975 617 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 CRISP3P54108 245 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 CASP6P55212 293 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 EEF1A1P68104 462 aaKnown RBP12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 FOXF1Q12946 379 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 QPRTQ15274 297 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 MAPRE2Q15555 327 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 MMEL1Q495T6 779 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 ACSF3Q4G176 576 aaPredicted RBP12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 MRPL2Q5T653 305 aaKnown RBP12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 C1orf185Q5T7R7 199 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 ZNF836Q6ZNA1 936 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 NET1Q7Z628 596 aaPredicted RBP12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 ADGRE4PQ86SQ3 457 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 GGNQ86UU5 652 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 OR10A6Q8NH74 314 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 FBXO27Q8NI29 283 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 WDR60Q8WVS4 1066 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 PMM1Q92871 262 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 WFDC6Q9BQY6 131 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 GPATCH1Q9BRR8 931 aaKnown RBP12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 MRGBPQ9NV56 204 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 CMTM6Q9NX76 183 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 ARL2BPQ9Y2Y0 163 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 PCNX3Q9H6A9 2034 aa12.82□□□□□ -0.36
SHKBP1-217ENST00000598558 HIVEP3Q5T1R4 2406 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 C7orf72A4D263 438 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 AHRRA9YTQ3 701 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 H3BML4 177 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 ETV2O00321 342 aaPredicted RBP12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 AIM2O14862 343 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 WDR1O75083 606 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 CLDN1O95832 211 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 GKN3PP0CG01 181 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 PRG2P13727 222 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 IL7RP16871 459 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 PRKCAP17252 672 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 AQP1P29972 269 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 RYKP34925 604 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 ACAA2P42765 397 aaKnown RBP12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 CCR4P51679 360 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 SUMO3P55854 103 aaPredicted RBP12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 SCARB2Q14108 478 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 BCL2A1Q16548 175 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 GLIPR1L2Q4G1C9 344 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 SLC25A53Q5H9E4 307 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 PRAMEF8Q5VWM4 474 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 PRAMEF7Q5VXH5 474 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 C8orf82Q6P1X6 216 aaPredicted RBP12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 AAGABQ6PD74 315 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 CCDC71Q8IV32 467 aaPredicted RBP12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 PEX5LQ8IYB4 626 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 UBQLNLQ8IYU4 475 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 TMCO5AQ8N6Q1 288 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 PHF10Q8WUB8 498 aaKnown RBP12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 OIT3Q8WWZ8 545 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 ZNF583Q96ND8 569 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 PIGQQ9BRB3 760 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 ARL8BQ9NVJ2 186 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 CALML5Q9NZT1 146 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 ZNF443Q9Y2A4 671 aaPredicted RBP12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 SLC35A3Q9Y2D2 325 aa12.81□□□□□ -0.36
SHKBP1-217ENST00000598558 GPC6Q9Y625 555 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms