RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 SFTPDP35247 375 aa13.15□□□□□ -0.3
PNKP-202ENST00000593706 HPCAL1P37235 193 aa13.15□□□□□ -0.3
PNKP-202ENST00000593706 ABCE1P61221 599 aaKnown RBP13.15□□□□□ -0.3
PNKP-202ENST00000593706 RAC1P63000 192 aa13.15□□□□□ -0.3
PNKP-202ENST00000593706 TNK1Q13470 666 aa13.15□□□□□ -0.3
PNKP-202ENST00000593706 CLEC12BQ2HXU8 276 aa13.15□□□□□ -0.3
PNKP-202ENST00000593706 PLPPR5Q32ZL2 321 aa13.15□□□□□ -0.3
PNKP-202ENST00000593706 BEND6Q5SZJ8 279 aaPredicted RBP13.15□□□□□ -0.3
PNKP-202ENST00000593706 GTF2IRD2BQ6EKJ0 949 aa13.15□□□□□ -0.3
PNKP-202ENST00000593706 FIGNL1Q6PIW4 674 aa13.15□□□□□ -0.3
PNKP-202ENST00000593706 CROCCP2Q86T23 111 aa13.15□□□□□ -0.3
PNKP-202ENST00000593706 GTF2IRD2Q86UP8 949 aa13.15□□□□□ -0.3
PNKP-202ENST00000593706 CDRT4Q8N9R6 151 aa13.15□□□□□ -0.3
PNKP-202ENST00000593706 STEAP2Q8NFT2 490 aa13.15□□□□□ -0.3
PNKP-202ENST00000593706 OR7A2PQ8NGA2 310 aa13.15□□□□□ -0.3
PNKP-202ENST00000593706 CEP70Q8NHQ1 597 aa13.15□□□□□ -0.3
PNKP-202ENST00000593706 JADE3Q92613 823 aa13.15□□□□□ -0.3
PNKP-202ENST00000593706 FBXW5Q969U6 566 aa13.15□□□□□ -0.3
PNKP-202ENST00000593706 S100PBPQ96BU1 408 aa13.15□□□□□ -0.3
PNKP-202ENST00000593706 NPAS1Q99742 590 aa13.15□□□□□ -0.3
PNKP-202ENST00000593706 TMEM204Q9BSN7 226 aa13.15□□□□□ -0.3
PNKP-202ENST00000593706 OR10A4Q9H209 315 aa13.15□□□□□ -0.3
PNKP-202ENST00000593706 MED17Q9NVC6 651 aa13.15□□□□□ -0.3
PNKP-202ENST00000593706 RNF115Q9Y4L5 304 aa13.15□□□□□ -0.3
PNKP-202ENST00000593706 A0A0J9YW62 118 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 C7orf72A4D263 438 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 RNF223E7ERA6 249 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 ADAMDEC1O15204 470 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 NKX2-2O95096 273 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 HSPA4LO95757 839 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 TP53P04637 393 aaPredicted RBP13.14□□□□□ -0.31
PNKP-202ENST00000593706 NGFRP08138 427 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 PABPC4LP0CB38 370 aaKnown RBP13.14□□□□□ -0.31
PNKP-202ENST00000593706 LAMP1P11279 417 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 EFNA1P20827 205 aaPredicted RBP13.14□□□□□ -0.31
PNKP-202ENST00000593706 BGNP21810 368 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 IL32P24001 234 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 WDR4P57081 412 aaKnown RBP13.14□□□□□ -0.31
PNKP-202ENST00000593706 CAPRIN1Q14444 709 aaKnown RBP13.14□□□□□ -0.31
PNKP-202ENST00000593706 SMU1Q2TAY7 513 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 TMEM201Q5SNT2 666 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 CPTPQ5TA50 214 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 IL23RQ5VWK5 629 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 MFSD12Q6NUT3 480 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 R3HCC1LQ7Z5L2 792 aaKnown RBP13.14□□□□□ -0.31
PNKP-202ENST00000593706 MISPQ8IVT2 679 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 KRTCAP2Q8N6L1 136 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 COX18Q8N8Q8 333 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 FNDC5Q8NAU1 212 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 MAPK1IP1LQ8NDC0 245 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 NUP43Q8NFH3 380 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 OR4C3Q8NH37 302 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 RAB3IL1Q8TBN0 382 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 ACTRT2Q8TDY3 377 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 GTPBP3Q969Y2 492 aaKnown RBP13.14□□□□□ -0.31
PNKP-202ENST00000593706 COQ8BQ96D53 544 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 TRMT61AQ96FX7 289 aaKnown RBP13.14□□□□□ -0.31
PNKP-202ENST00000593706 CHMP6Q96FZ7 201 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 KLHL15Q96M94 604 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 CENPHQ9H3R5 247 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 ESRP2Q9H6T0 727 aaKnown RBP13.14□□□□□ -0.31
PNKP-202ENST00000593706 NGBQ9NPG2 151 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 SH3BP4Q9P0V3 963 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.14□□□□□ -0.31
PNKP-202ENST00000593706 RAP2CQ9Y3L5 183 aa13.14□□□□□ -0.31
PNKP-202ENST00000593706 CRLF1O75462 422 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 KCNK2O95069 426 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 SNUPNO95149 360 aaKnown RBP13.13□□□□□ -0.31
PNKP-202ENST00000593706 NUDT14O95848 222 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 CD3EP07766 207 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 ACP2P11117 423 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 G6PDP11413 515 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 PSMA4P25789 261 aaKnown RBP13.13□□□□□ -0.31
PNKP-202ENST00000593706 SLC18A1P54219 525 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 MANFP55145 182 aaKnown RBP13.13□□□□□ -0.31
PNKP-202ENST00000593706 CARD18P57730 90 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 EMX2Q04743 252 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 ETFDHQ16134 617 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 PDCD2Q16342 344 aaPredicted RBP13.13□□□□□ -0.31
PNKP-202ENST00000593706 ZNF239Q16600 458 aaKnown RBP13.13□□□□□ -0.31
PNKP-202ENST00000593706 LILRA2Q8N149 483 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 ZNF619Q8N2I2 560 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 SLC16A11Q8NCK7 471 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 SPATA3Q8NHX4 192 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 B4GALNT2Q8NHY0 566 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 FAM110BQ8TC76 370 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 RNF128Q8TEB7 428 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 ABHD3Q8WU67 409 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 ROBO4Q8WZ75 1007 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 OSTF1Q92882 214 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 CPNE4Q96A23 557 aaPredicted RBP13.13□□□□□ -0.31
PNKP-202ENST00000593706 TLCD1Q96CP7 247 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 TUBGCP3Q96CW5 907 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 FAM120BQ96EK7 910 aaKnown RBP13.13□□□□□ -0.31
PNKP-202ENST00000593706 OTUB1Q96FW1 271 aaPredicted RBP13.13□□□□□ -0.31
PNKP-202ENST00000593706 TIGARQ9NQ88 270 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 UBQLN4Q9NRR5 601 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 SNX8Q9Y5X2 465 aa13.13□□□□□ -0.31
PNKP-202ENST00000593706 TMEM120BA0PK00 339 aa13.12□□□□□ -0.31
PNKP-202ENST00000593706 ANKRD28O15084 1053 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms