RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 SNPHO15079 494 aa9.8□□□□□ -0.84
SS18-213ENST00000579640 SLC25A12O75746 678 aa9.8□□□□□ -0.84
SS18-213ENST00000579640 OR5F1O95221 314 aa9.8□□□□□ -0.84
SS18-213ENST00000579640 ITGB2P05107 769 aa9.8□□□□□ -0.84
SS18-213ENST00000579640 LINGO3P0C6S8 592 aa9.8□□□□□ -0.84
SS18-213ENST00000579640 THRBP10828 461 aa9.8□□□□□ -0.84
SS18-213ENST00000579640 CD46P15529 392 aa9.8□□□□□ -0.84
SS18-213ENST00000579640 PGCP20142 388 aa9.8□□□□□ -0.84
SS18-213ENST00000579640 CNR1P21554 472 aa9.8□□□□□ -0.84
SS18-213ENST00000579640 ST13P50502 369 aaKnown RBP9.8□□□□□ -0.84
SS18-213ENST00000579640 TAS2R41P59536 307 aa9.8□□□□□ -0.84
SS18-213ENST00000579640 PRAMEF20Q5VT98 475 aa9.8□□□□□ -0.84
SS18-213ENST00000579640 BICRALQ6AI39 1079 aa9.8□□□□□ -0.84
SS18-213ENST00000579640 SPINK14Q6IE38 97 aa9.8□□□□□ -0.84
SS18-213ENST00000579640 ZNF613Q6PF04 617 aa9.8□□□□□ -0.84
SS18-213ENST00000579640 CBLN3Q6UW01 205 aa9.8□□□□□ -0.84
SS18-213ENST00000579640 PLEKHM3Q6ZWE6 761 aa9.8□□□□□ -0.84
SS18-213ENST00000579640 MDGA2Q7Z553 956 aa9.8□□□□□ -0.84
SS18-213ENST00000579640 LSMEM1Q8N8F7 131 aa9.8□□□□□ -0.84
SS18-213ENST00000579640 MDS2Q8NDY4 140 aa9.8□□□□□ -0.84
SS18-213ENST00000579640 CENPNQ96H22 339 aaPredicted RBP9.8□□□□□ -0.84
SS18-213ENST00000579640 SH3YL1Q96HL8 342 aaPredicted RBP9.8□□□□□ -0.84
SS18-213ENST00000579640 C5orf34Q96MH7 638 aa9.8□□□□□ -0.84
SS18-213ENST00000579640 PLA2G3Q9NZ20 509 aa9.8□□□□□ -0.84
SS18-213ENST00000579640 KLF13Q9Y2Y9 288 aaPredicted RBP9.8□□□□□ -0.84
SS18-213ENST00000579640 ANKUB1A6NFN9 424 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 MKRN2OSH3BPM6 223 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 OIP5O43482 229 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 TPST2O60704 377 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 PRSS23O95084 383 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 PRG2P13727 222 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 ELAVL4P26378 380 aaKnown RBP9.79□□□□□ -0.84
SS18-213ENST00000579640 MASP1P48740 699 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 CCR4P51679 360 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 SLC34A1Q06495 639 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 ST3GAL3Q11203 375 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 OR1Q1Q15612 314 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 COL28A1Q2UY09 1125 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 NDUFAF6Q330K2 333 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 ENTPD8Q5MY95 495 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 SLC25A25Q6KCM7 469 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 IGFL3Q6UXB1 125 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 ZNF605Q86T29 641 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 PLCZ1Q86YW0 608 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 OFCC1Q8IZS5 231 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 LILRA2Q8N149 483 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 PIK3C3Q8NEB9 887 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 DHRS1Q96LJ7 313 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 SIGLEC12Q96PQ1 595 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 PKP2Q99959 881 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 FNDC11Q9BVV2 318 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.79□□□□□ -0.84
SS18-213ENST00000579640 ANKRD19PQ9H560 264 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 PTGES2Q9H7Z7 377 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 REEP1Q9H902 201 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 PROK2Q9HC23 129 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 RPS6KB2Q9UBS0 482 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 RIMS3Q9UJD0 308 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 A4GNTQ9UNA3 340 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 PCDHGB6Q9Y5F9 930 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 TPRP12270 2363 aaKnown RBP9.79□□□□□ -0.84
SS18-213ENST00000579640 TRAPPC13A5PLN9 417 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 CPSF4LA6NMK7 179 aaKnown RBP9.79□□□□□ -0.84
SS18-213ENST00000579640 J3KTA2 159 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 NME2P1O60361 137 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 SEMA7AO75326 666 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 TRIM3O75382 744 aaPredicted RBP9.79□□□□□ -0.84
SS18-213ENST00000579640 DIRAS1O95057 198 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 F10P00742 488 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 H1F0P07305 194 aaKnown RBP9.79□□□□□ -0.84
SS18-213ENST00000579640 SP1P08047 785 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 NME2P22392 152 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 HTR2AP28223 471 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 RRM2P31350 389 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 RYKP34925 604 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 YAP1P46937 504 aaKnown RBP9.79□□□□□ -0.84
SS18-213ENST00000579640 TNFSF10P50591 281 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 CXADRP78310 365 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 HOXC5Q00444 222 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 SPIBQ01892 262 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 PIN1Q13526 163 aaPredicted RBP9.79□□□□□ -0.84
SS18-213ENST00000579640 TBR1Q16650 682 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 COLEC12Q5KU26 742 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 SWT1Q5T5J6 900 aaKnown RBP9.79□□□□□ -0.84
SS18-213ENST00000579640 TIGD3Q6B0B8 471 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 WBP2NLQ6ICG8 309 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 ZADH2Q8N4Q0 377 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 FADS6Q8N9I5 356 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 TMEM178AQ8NBL3 297 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 OR4K17Q8NGC6 315 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 OR1J4Q8NGS1 313 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 ZNF563Q8TA94 476 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 GPR119Q8TDV5 335 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 ADAMTS16Q8TE57 1224 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 DNAJA4Q8WW22 397 aaPredicted RBP9.79□□□□□ -0.84
SS18-213ENST00000579640 TMEM234Q8WY98 164 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 SCMH1Q96GD3 660 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 ZNF597Q96LX8 424 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 EPYCQ99645 322 aa9.79□□□□□ -0.84
SS18-213ENST00000579640 FAM173AQ9BQD7 235 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms