RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 HMGA2P52926 109 aa14.73□□□□□ -0.05
SS18-211ENST00000578954 TMPRSS3P57727 454 aa14.73□□□□□ -0.05
SS18-211ENST00000578954 LINC00696Q6ZRV3 163 aa14.73□□□□□ -0.05
SS18-211ENST00000578954 MDGA2Q7Z553 956 aa14.73□□□□□ -0.05
SS18-211ENST00000578954 PSD4Q8NDX1 1056 aa14.73□□□□□ -0.05
SS18-211ENST00000578954 MDS2Q8NDY4 140 aa14.73□□□□□ -0.05
SS18-211ENST00000578954 TMEM41AQ96HV5 264 aa14.73□□□□□ -0.05
SS18-211ENST00000578954 BDH2Q9BUT1 245 aa14.73□□□□□ -0.05
SS18-211ENST00000578954 ANKRD19PQ9H560 264 aa14.73□□□□□ -0.05
SS18-211ENST00000578954 GALNT9Q9HCQ5 603 aa14.73□□□□□ -0.05
SS18-211ENST00000578954 TIMMDC1Q9NPL8 285 aa14.73□□□□□ -0.05
SS18-211ENST00000578954 SACM1LQ9NTJ5 587 aa14.73□□□□□ -0.05
SS18-211ENST00000578954 PCDHGA9Q9Y5G4 932 aaKnown RBP14.73□□□□□ -0.05
SS18-211ENST00000578954 C17orf51A8MQB3 221 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 SNPHO15079 494 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 HCRTR2O43614 444 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 SNX4O95219 450 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 THRBP10828 461 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 ITPKBP27987 946 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 RRM2P31350 389 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 YAP1P46937 504 aaKnown RBP14.72□□□□□ -0.05
SS18-211ENST00000578954 LIMS1P48059 325 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 DLX5P56178 289 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 HOXC5Q00444 222 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 OC90Q02509 493 aaPredicted RBP14.72□□□□□ -0.05
SS18-211ENST00000578954 RAPSNQ13702 412 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 OR1C1Q15619 314 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 ENTPD8Q5MY95 495 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 ZNF613Q6PF04 617 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 AMIGO2Q86SJ2 522 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 FADS6Q8N9I5 356 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 OR4C15Q8NGM1 316 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 OR5W2Q8NH69 310 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 B4GALNT2Q8NHY0 566 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 DUSP19Q8WTR2 217 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 SIGLEC12Q96PQ1 595 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 FUZQ9BT04 418 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 TRIM2Q9C040 744 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 ACER3Q9NUN7 267 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 ANKRD10Q9NXR5 420 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 VNN3Q9NY84 501 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 HRH3Q9Y5N1 445 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 LYVE1Q9Y5Y7 322 aa14.72□□□□□ -0.05
SS18-211ENST00000578954 CELSR3Q9NYQ7 3312 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 A0A0B4J2E0 115 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 A0A1B0GX12 115 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 A0A1W2PRQ8 180 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 ANKUB1A6NFN9 424 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 ETV2O00321 342 aaPredicted RBP14.71□□□□□ -0.05
SS18-211ENST00000578954 TRIM3O75382 744 aaPredicted RBP14.71□□□□□ -0.05
SS18-211ENST00000578954 LYPD3O95274 346 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 P04436 131 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 PIN1Q13526 163 aaPredicted RBP14.71□□□□□ -0.05
SS18-211ENST00000578954 DGCR6Q14129 220 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 OR1Q1Q15612 314 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 COL28A1Q2UY09 1125 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 COLEC12Q5KU26 742 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 PRAMEF20Q5VT98 475 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 PLEKHM3Q6ZWE6 761 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 WDSUB1Q8N9V3 476 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 ADAMTS16Q8TE57 1224 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 ZCCHC14Q8WYQ9 949 aaKnown RBP14.71□□□□□ -0.05
SS18-211ENST00000578954 NRBF2Q96F24 287 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 EPYCQ99645 322 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 KLHDC3Q9BQ90 382 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 PRR14Q9BWN1 585 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 REEP1Q9H902 201 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 NMNAT1Q9HAN9 279 aaPredicted RBP14.71□□□□□ -0.05
SS18-211ENST00000578954 MAN2C1Q9NTJ4 1040 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 PLA2G3Q9NZ20 509 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 PPP4R1LQ9P1A2 415 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 NTNG1Q9Y2I2 539 aa14.71□□□□□ -0.05
SS18-211ENST00000578954 FRYQ5TBA9 3013 aa14.71□□□□□ -0.06
SS18-211ENST00000578954 TRAPPC13A5PLN9 417 aa14.7□□□□□ -0.06
SS18-211ENST00000578954 CPSF4LA6NMK7 179 aaKnown RBP14.7□□□□□ -0.06
SS18-211ENST00000578954 SLC25A12O75746 678 aa14.7□□□□□ -0.06
SS18-211ENST00000578954 CYP7B1O75881 506 aa14.7□□□□□ -0.06
SS18-211ENST00000578954 THY1P04216 161 aa14.7□□□□□ -0.06
SS18-211ENST00000578954 H1F0P07305 194 aaKnown RBP14.7□□□□□ -0.06
SS18-211ENST00000578954 LINGO3P0C6S8 592 aa14.7□□□□□ -0.06
SS18-211ENST00000578954 UQCRBP14927 111 aa14.7□□□□□ -0.06
SS18-211ENST00000578954 PGCP20142 388 aa14.7□□□□□ -0.06
SS18-211ENST00000578954 FPR1P21462 350 aa14.7□□□□□ -0.06
SS18-211ENST00000578954 CNR1P21554 472 aa14.7□□□□□ -0.06
SS18-211ENST00000578954 DNAJA1P31689 397 aaKnown RBP14.7□□□□□ -0.06
SS18-211ENST00000578954 IFNA8P32881 189 aa14.7□□□□□ -0.06
SS18-211ENST00000578954 GCKP35557 465 aa14.7□□□□□ -0.06
SS18-211ENST00000578954 SMIM11AP58511 58 aa14.7□□□□□ -0.06
SS18-211ENST00000578954 TAS2R41P59536 307 aa14.7□□□□□ -0.06
SS18-211ENST00000578954 SPIBQ01892 262 aa14.7□□□□□ -0.06
SS18-211ENST00000578954 ST3GAL3Q11203 375 aa14.7□□□□□ -0.06
SS18-211ENST00000578954 CBFBQ13951 182 aa14.7□□□□□ -0.06
SS18-211ENST00000578954 GANABQ14697 944 aaKnown RBP14.7□□□□□ -0.06
SS18-211ENST00000578954 SWT1Q5T5J6 900 aaKnown RBP14.7□□□□□ -0.06
SS18-211ENST00000578954 SPINK14Q6IE38 97 aa14.7□□□□□ -0.06
SS18-211ENST00000578954 BORAQ6PGQ7 559 aa14.7□□□□□ -0.06
SS18-211ENST00000578954 IGFL3Q6UXB1 125 aa14.7□□□□□ -0.06
SS18-211ENST00000578954 PLCZ1Q86YW0 608 aa14.7□□□□□ -0.06
SS18-211ENST00000578954 EPHX4Q8IUS5 362 aa14.7□□□□□ -0.06
SS18-211ENST00000578954 TMCO5AQ8N6Q1 288 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms