RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 SLC22A20A6NK97 555 aa17.58■□□□□ 0.4
SS18-209ENST00000578595 EEF1E1-BLOC1S5C9J1V9 151 aa17.58■□□□□ 0.4
SS18-209ENST00000578595 EEF1E1O43324 174 aaKnown RBP17.58■□□□□ 0.4
SS18-209ENST00000578595 EIF4E2O60573 245 aaKnown RBP17.58■□□□□ 0.4
SS18-209ENST00000578595 BCHEP06276 602 aa17.58■□□□□ 0.4
SS18-209ENST00000578595 CAPN3P20807 821 aa17.58■□□□□ 0.4
SS18-209ENST00000578595 EIF1AXP47813 144 aaKnown RBP17.58■□□□□ 0.4
SS18-209ENST00000578595 IRX1P78414 480 aaPredicted RBP17.58■□□□□ 0.4
SS18-209ENST00000578595 CBFBQ13951 182 aa17.58■□□□□ 0.4
SS18-209ENST00000578595 BCL2A1Q16548 175 aa17.58■□□□□ 0.4
SS18-209ENST00000578595 SLC25A35Q3KQZ1 300 aa17.58■□□□□ 0.4
SS18-209ENST00000578595 FUNDC1Q8IVP5 155 aa17.58■□□□□ 0.4
SS18-209ENST00000578595 GTPBP8Q8N3Z3 284 aaPredicted RBP17.58■□□□□ 0.4
SS18-209ENST00000578595 ATP6V1C2Q8NEY4 427 aa17.58■□□□□ 0.4
SS18-209ENST00000578595 INTS12Q96CB8 462 aaKnown RBP17.58■□□□□ 0.4
SS18-209ENST00000578595 ARSGQ96EG1 525 aa17.58■□□□□ 0.4
SS18-209ENST00000578595 TRNT1Q96Q11 434 aaKnown RBP17.58■□□□□ 0.4
SS18-209ENST00000578595 NPAS1Q99742 590 aa17.58■□□□□ 0.4
SS18-209ENST00000578595 THUMPD3Q9BV44 507 aaKnown RBP17.58■□□□□ 0.4
SS18-209ENST00000578595 PRRG4Q9BZD6 226 aa17.58■□□□□ 0.4
SS18-209ENST00000578595 PAIP1Q9H074 479 aaKnown RBP17.58■□□□□ 0.4
SS18-209ENST00000578595 RAD21L1Q9H4I0 556 aa17.58■□□□□ 0.4
SS18-209ENST00000578595 CLCF1Q9UBD9 225 aa17.58■□□□□ 0.4
SS18-209ENST00000578595 NIPSNAP3AQ9UFN0 247 aaPredicted RBP17.58■□□□□ 0.4
SS18-209ENST00000578595 KCNE5Q9UJ90 142 aa17.58■□□□□ 0.4
SS18-209ENST00000578595 PCDHB14Q9Y5E9 798 aa17.58■□□□□ 0.4
SS18-209ENST00000578595 MPDZO75970 2070 aa17.58■□□□□ 0.4
SS18-209ENST00000578595 ABCA12Q86UK0 2595 aa17.57■□□□□ 0.4
SS18-209ENST00000578595 A0A096LPI6 279 aa17.57■□□□□ 0.4
SS18-209ENST00000578595 CLIC1O00299 241 aa17.57■□□□□ 0.4
SS18-209ENST00000578595 CHRM4P08173 479 aa17.57■□□□□ 0.4
SS18-209ENST00000578595 CEACAM8P31997 349 aaPredicted RBP17.57■□□□□ 0.4
SS18-209ENST00000578595 RYKP34925 604 aa17.57■□□□□ 0.4
SS18-209ENST00000578595 SFTPDP35247 375 aa17.57■□□□□ 0.4
SS18-209ENST00000578595 ZNF136P52737 540 aa17.57■□□□□ 0.4
SS18-209ENST00000578595 ARFIP2P53365 341 aa17.57■□□□□ 0.4
SS18-209ENST00000578595 SUCLG1P53597 346 aaKnown RBP17.57■□□□□ 0.4
SS18-209ENST00000578595 FGFBP1Q14512 234 aa17.57■□□□□ 0.4
SS18-209ENST00000578595 MAPK14Q16539 360 aa17.57■□□□□ 0.4
SS18-209ENST00000578595 POMZP3Q6PJE2 187 aa17.57■□□□□ 0.4
SS18-209ENST00000578595 OR5W2Q8NH69 310 aa17.57■□□□□ 0.4
SS18-209ENST00000578595 FBXO27Q8NI29 283 aa17.57■□□□□ 0.4
SS18-209ENST00000578595 WDR60Q8WVS4 1066 aa17.57■□□□□ 0.4
SS18-209ENST00000578595 WNT2BQ93097 391 aa17.57■□□□□ 0.4
SS18-209ENST00000578595 LRRC46Q96FV0 321 aa17.57■□□□□ 0.4
SS18-209ENST00000578595 ST6GALNAC1Q9NSC7 600 aaPredicted RBP17.57■□□□□ 0.4
SS18-209ENST00000578595 ICAM5Q9UMF0 924 aa17.57■□□□□ 0.4
SS18-209ENST00000578595 SLC35A3Q9Y2D2 325 aa17.57■□□□□ 0.4
SS18-209ENST00000578595 PRAMEF27A3QJZ7 478 aa17.56■□□□□ 0.4
SS18-209ENST00000578595 ANGPT2O15123 496 aa17.56■□□□□ 0.4
SS18-209ENST00000578595 ATP8B1O43520 1251 aa17.56■□□□□ 0.4
SS18-209ENST00000578595 IL7RP16871 459 aa17.56■□□□□ 0.4
SS18-209ENST00000578595 CTSSP25774 331 aa17.56■□□□□ 0.4
SS18-209ENST00000578595 UQCRC1P31930 480 aa17.56■□□□□ 0.4
SS18-209ENST00000578595 EIF1P41567 113 aaKnown RBP17.56■□□□□ 0.4
SS18-209ENST00000578595 CRISP3P54108 245 aa17.56■□□□□ 0.4
SS18-209ENST00000578595 CLDN15P56746 228 aa17.56■□□□□ 0.4
SS18-209ENST00000578595 SKP2Q13309 424 aa17.56■□□□□ 0.4
SS18-209ENST00000578595 GNA13Q14344 377 aa17.56■□□□□ 0.4
SS18-209ENST00000578595 PON3Q15166 354 aa17.56■□□□□ 0.4
SS18-209ENST00000578595 QPRTQ15274 297 aa17.56■□□□□ 0.4
SS18-209ENST00000578595 TOMM34Q15785 309 aaPredicted RBP17.56■□□□□ 0.4
SS18-209ENST00000578595 LRRC74BQ6ZQY2 392 aa17.56■□□□□ 0.4
SS18-209ENST00000578595 ZNF563Q8TA94 476 aa17.56■□□□□ 0.4
SS18-209ENST00000578595 STON2Q8WXE9 905 aa17.56■□□□□ 0.4
SS18-209ENST00000578595 ZNF845Q96IR2 970 aaPredicted RBP17.56■□□□□ 0.4
SS18-209ENST00000578595 LAT2Q9GZY6 243 aa17.56■□□□□ 0.4
SS18-209ENST00000578595 SLC38A1Q9H2H9 487 aa17.56■□□□□ 0.4
SS18-209ENST00000578595 CALML5Q9NZT1 146 aa17.56■□□□□ 0.4
SS18-209ENST00000578595 GPC6Q9Y625 555 aaPredicted RBP17.56■□□□□ 0.4
SS18-209ENST00000578595 C7orf72A4D263 438 aa17.55■□□□□ 0.4
SS18-209ENST00000578595 C5orf58C9J3I9 102 aa17.55■□□□□ 0.4
SS18-209ENST00000578595 TNFSF11O14788 317 aa17.55■□□□□ 0.4
SS18-209ENST00000578595 TGM6O95932 706 aa17.55■□□□□ 0.4
SS18-209ENST00000578595 LINGO3P0C6S8 592 aa17.55■□□□□ 0.4
SS18-209ENST00000578595 PGCP20142 388 aa17.55■□□□□ 0.4
SS18-209ENST00000578595 OPRM1P35372 400 aa17.55■□□□□ 0.4
SS18-209ENST00000578595 CPA2P48052 419 aa17.55■□□□□ 0.4
SS18-209ENST00000578595 SIRPAP78324 504 aa17.55■□□□□ 0.4
SS18-209ENST00000578595 TMEM44Q2T9K0 475 aa17.55■□□□□ 0.4
SS18-209ENST00000578595 RPS26P11Q5JNZ5 115 aaPredicted RBP17.55■□□□□ 0.4
SS18-209ENST00000578595 PAGE3Q5JUK9 113 aa17.55■□□□□ 0.4
SS18-209ENST00000578595 PDSS1Q5T2R2 415 aa17.55■□□□□ 0.4
SS18-209ENST00000578595 PEX5LQ8IYB4 626 aa17.55■□□□□ 0.4
SS18-209ENST00000578595 CNEP1R1Q8N9A8 125 aa17.55■□□□□ 0.4
SS18-209ENST00000578595 RELL2Q8NC24 303 aaPredicted RBP17.55■□□□□ 0.4
SS18-209ENST00000578595 FNDC9Q8TBE3 224 aa17.55■□□□□ 0.4
SS18-209ENST00000578595 POC1BQ8TC44 478 aa17.55■□□□□ 0.4
SS18-209ENST00000578595 GPR119Q8TDV5 335 aa17.55■□□□□ 0.4
SS18-209ENST00000578595 FIG4Q92562 907 aa17.55■□□□□ 0.4
SS18-209ENST00000578595 ZFP3Q96NJ6 502 aa17.55■□□□□ 0.4
SS18-209ENST00000578595 SAP130Q9H0E3 1048 aa17.55■□□□□ 0.4
SS18-209ENST00000578595 LEF1Q9UJU2 399 aaPredicted RBP17.55■□□□□ 0.4
SS18-209ENST00000578595 ANKHD1Q8IWZ3 2542 aaKnown RBP17.54■□□□□ 0.4
SS18-209ENST00000578595 ITPR2Q14571 2701 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 A0A1W2PP18 115 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 CLDN24A6NM45 220 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 SYNGR4O95473 234 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 PRKCAP17252 672 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 IL11P20809 199 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms