RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 ZNF600Q6ZNG1 722 aa3.9□□□□□ -1.79
NUP88-213ENST00000576862 ARMCX2Q7L311 632 aa3.9□□□□□ -1.79
NUP88-213ENST00000576862 NAXDQ8IW45 347 aa3.9□□□□□ -1.79
NUP88-213ENST00000576862 CD302Q8IX05 232 aa3.9□□□□□ -1.79
NUP88-213ENST00000576862 FAM9CQ8IZT9 166 aa3.9□□□□□ -1.79
NUP88-213ENST00000576862 SFRP1Q8N474 314 aa3.9□□□□□ -1.79
NUP88-213ENST00000576862 ZNF321PQ8N8H1 164 aa3.9□□□□□ -1.79
NUP88-213ENST00000576862 LPCAT1Q8NF37 534 aa3.9□□□□□ -1.79
NUP88-213ENST00000576862 BEST4Q8NFU0 473 aa3.9□□□□□ -1.79
NUP88-213ENST00000576862 ANKRD7Q92527 254 aa3.9□□□□□ -1.79
NUP88-213ENST00000576862 ZBED3Q96IU2 234 aaPredicted RBP3.9□□□□□ -1.79
NUP88-213ENST00000576862 CAPNS2Q96L46 248 aa3.9□□□□□ -1.79
NUP88-213ENST00000576862 MCCC1Q96RQ3 725 aaPredicted RBP3.9□□□□□ -1.79
NUP88-213ENST00000576862 ZBTB18Q99592 522 aa3.9□□□□□ -1.79
NUP88-213ENST00000576862 IL1RL2Q9HB29 575 aa3.9□□□□□ -1.79
NUP88-213ENST00000576862 TRPC4Q9UBN4 977 aa3.9□□□□□ -1.79
NUP88-213ENST00000576862 SPASTQ9UBP0 616 aa3.9□□□□□ -1.79
NUP88-213ENST00000576862 STK38LQ9Y2H1 464 aa3.9□□□□□ -1.79
NUP88-213ENST00000576862 MRPS7Q9Y2R9 242 aaKnown RBP3.9□□□□□ -1.79
NUP88-213ENST00000576862 MAB21L2Q9Y586 359 aa3.9□□□□□ -1.79
NUP88-213ENST00000576862 VIRMAQ69YN4 1812 aaKnown RBP3.9□□□□□ -1.79
NUP88-213ENST00000576862 ZNF831Q5JPB2 1677 aa3.9□□□□□ -1.79
NUP88-213ENST00000576862 ZNF532Q9HCE3 1301 aa3.9□□□□□ -1.79
NUP88-213ENST00000576862 TRBV2A0A0J9YWF9 115 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 ZSCAN5BA6NJL1 495 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 E7EWF7 191 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 GOLGA8SH3BPF8 625 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 NVLO15381 856 aaKnown RBP3.89□□□□□ -1.79
NUP88-213ENST00000576862 LRRTM2O43300 516 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 PRKAB2O43741 272 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 CTAG2O75638 210 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 RHBDL1O75783 438 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 RHOBTB1O94844 696 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 GAS8O95995 478 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 FCGR3AP08637 254 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 AZU1P20160 251 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 PSMA5P28066 241 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 BRCC3P46736 316 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 OR1G1P47890 313 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 RPL34P49207 117 aaKnown RBP3.89□□□□□ -1.79
NUP88-213ENST00000576862 IST1P53990 364 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 PLTPP55058 493 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 ATP5IP56385 69 aaPredicted RBP3.89□□□□□ -1.79
NUP88-213ENST00000576862 EIF3EP60228 445 aaKnown RBP3.89□□□□□ -1.79
NUP88-213ENST00000576862 UBE2IP63279 158 aaKnown RBP3.89□□□□□ -1.79
NUP88-213ENST00000576862 GK2Q14410 553 aaPredicted RBP3.89□□□□□ -1.79
NUP88-213ENST00000576862 KRT31Q15323 416 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 TIMM50Q3ZCQ8 353 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 KCTD21Q4G0X4 260 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 PRR30Q53SZ7 412 aaPredicted RBP3.89□□□□□ -1.79
NUP88-213ENST00000576862 UTF1Q5T230 341 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 LIN9Q5TKA1 542 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 C1orf189Q5VU69 101 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 ERICH5Q6P6B1 374 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 BLOC1S2Q6QNY1 142 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 SYVN1Q86TM6 617 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 ZBED8Q8IZ13 594 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 PARP8Q8N3A8 854 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 NECAB1Q8N987 351 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 EIF1ADQ8N9N8 165 aaKnown RBP3.89□□□□□ -1.79
NUP88-213ENST00000576862 SIDT2Q8NBJ9 832 aaKnown RBP3.89□□□□□ -1.79
NUP88-213ENST00000576862 RELL2Q8NC24 303 aaPredicted RBP3.89□□□□□ -1.79
NUP88-213ENST00000576862 ICA1LQ8NDH6 482 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 BCL2L2Q92843 193 aaPredicted RBP3.89□□□□□ -1.79
NUP88-213ENST00000576862 PEX13Q92968 403 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 MRPL53Q96EL3 112 aaKnown RBP3.89□□□□□ -1.79
NUP88-213ENST00000576862 IFT74Q96LB3 600 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 SAMD8Q96LT4 415 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 TTYH2Q9BSA4 534 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 ST6GALNAC5Q9BVH7 336 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 OSBPL8Q9BZF1 889 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 CRNKL1Q9BZJ0 848 aaKnown RBP3.89□□□□□ -1.79
NUP88-213ENST00000576862 EXO5Q9H790 373 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 SLC25A19Q9HC21 320 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 SYTL2Q9HCH5 934 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 SMPD3Q9NY59 655 aaPredicted RBP3.89□□□□□ -1.79
NUP88-213ENST00000576862 ABCD2Q9UBJ2 740 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 CD300AQ9UGN4 299 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 FOXA2Q9Y261 457 aaPredicted RBP3.89□□□□□ -1.79
NUP88-213ENST00000576862 TDRKHQ9Y2W6 561 aaKnown RBP3.89□□□□□ -1.79
NUP88-213ENST00000576862 TEX264Q9Y6I9 313 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 SCN7AQ01118 1682 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 C4BP0C0L5 1744 aa3.89□□□□□ -1.79
NUP88-213ENST00000576862 COL5A3P25940 1745 aaPredicted RBP3.89□□□□□ -1.79
NUP88-213ENST00000576862 TRAV6A0A075B6T7 132 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 A0A0U1RQS6 177 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 FAM168BA1KXE4 195 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 OR6C65A6NJZ3 312 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 F8WDY8 70 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 K7ERQ8 282 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 SULT1B1O43704 296 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 NIPSNAP2O75323 286 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 CIB2O75838 187 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 AK1P00568 194 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 ABHD2P08910 425 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 MMP10P09238 476 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 STAG3L3P0CL85 134 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 KLK2P20151 261 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 HNRNPA2B1P22626 353 aaKnown RBP3.88□□□□□ -1.79
NUP88-213ENST00000576862 CPN2P22792 545 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms