RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 CLIP4Q8N3C7 705 aa15.54■□□□□ 0.08
NUP88-210ENST00000574867 CISD2Q8N5K1 135 aaKnown RBP15.54■□□□□ 0.08
NUP88-210ENST00000574867 SMYD1Q8NB12 490 aa15.54■□□□□ 0.08
NUP88-210ENST00000574867 LZICQ8WZA0 190 aa15.54■□□□□ 0.08
NUP88-210ENST00000574867 CLPTM1LQ96KA5 538 aa15.54■□□□□ 0.08
NUP88-210ENST00000574867 OLAHQ9NV23 265 aa15.54■□□□□ 0.08
NUP88-210ENST00000574867 RLIMQ9NVW2 624 aa15.54■□□□□ 0.08
NUP88-210ENST00000574867 RPS6KA6Q9UK32 745 aa15.54■□□□□ 0.08
NUP88-210ENST00000574867 PRDM4Q9UKN5 801 aa15.54■□□□□ 0.08
NUP88-210ENST00000574867 MRPS18CQ9Y3D5 142 aaKnown RBP15.54■□□□□ 0.08
NUP88-210ENST00000574867 CHST2Q9Y4C5 530 aa15.54■□□□□ 0.08
NUP88-210ENST00000574867 A0A087WZY1 265 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 BCAS1O75363 584 aaPredicted RBP15.53■□□□□ 0.08
NUP88-210ENST00000574867 HPNP05981 417 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 DPP4P27487 766 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 ZNF41P51814 821 aaPredicted RBP15.53■□□□□ 0.08
NUP88-210ENST00000574867 DUSP7Q16829 419 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 COLEC12Q5KU26 742 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 PGM2L1Q6PCE3 622 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 ASRGL1Q7L266 308 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 SIAH3Q8IW03 269 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 ULK2Q8IYT8 1036 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 EID3Q8N140 333 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 OR52E4Q8NGH9 312 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 FAR1Q8WVX9 515 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 NR4A3Q92570 626 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 PROX1Q92786 737 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 CCDC124Q96CT7 223 aaKnown RBP15.53■□□□□ 0.08
NUP88-210ENST00000574867 SNRNP40Q96DI7 357 aaKnown RBP15.53■□□□□ 0.08
NUP88-210ENST00000574867 OR2B2Q9GZK3 357 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 PCDHAC1Q9H158 963 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 ACTR3BQ9P1U1 418 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 SAMD4AQ9UPU9 718 aaKnown RBP15.53■□□□□ 0.08
NUP88-210ENST00000574867 NTNG1Q9Y2I2 539 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 ZFYVE26Q68DK2 2539 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 FAAHO00519 579 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 TPST1O60507 370 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 STAMBPO95630 424 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 NUDT14O95848 222 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 SERPINA1P01009 418 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 PGCP20142 388 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 MSX2P35548 267 aaPredicted RBP15.53■□□□□ 0.08
NUP88-210ENST00000574867 TOMM20Q15388 145 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 ZNF324BQ6AW86 544 aaPredicted RBP15.53■□□□□ 0.08
NUP88-210ENST00000574867 CBLL1Q75N03 491 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 NSMCE2Q96MF7 247 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 ACKR4Q9NPB9 350 aa15.53■□□□□ 0.08
NUP88-210ENST00000574867 NCKAP5O14513 1909 aa15.52■□□□□ 0.08
NUP88-210ENST00000574867 CFAP73A6NFT4 308 aa15.52■□□□□ 0.08
NUP88-210ENST00000574867 SUV39H1O43463 412 aa15.52■□□□□ 0.08
NUP88-210ENST00000574867 GMFGO60234 142 aa15.52■□□□□ 0.08
NUP88-210ENST00000574867 LGI1O95970 557 aa15.52■□□□□ 0.08
NUP88-210ENST00000574867 FESP07332 822 aa15.52■□□□□ 0.08
NUP88-210ENST00000574867 SELENOWP63302 87 aa15.52■□□□□ 0.08
NUP88-210ENST00000574867 EPS8Q12929 822 aa15.52■□□□□ 0.08
NUP88-210ENST00000574867 SLC10A1Q14973 349 aa15.52■□□□□ 0.08
NUP88-210ENST00000574867 MTX3Q5HYI7 312 aa15.52■□□□□ 0.08
NUP88-210ENST00000574867 GPR32P1Q8NGA4 272 aa15.52■□□□□ 0.08
NUP88-210ENST00000574867 ZBTB8AQ96BR9 441 aa15.52■□□□□ 0.08
NUP88-210ENST00000574867 BARD1Q99728 777 aaKnown RBP15.52■□□□□ 0.08
NUP88-210ENST00000574867 RSPO3Q9BXY4 272 aaPredicted RBP15.52■□□□□ 0.08
NUP88-210ENST00000574867 DCAF13Q9NV06 445 aaKnown RBP15.52■□□□□ 0.08
NUP88-210ENST00000574867 SLC9A8Q9Y2E8 581 aa15.52■□□□□ 0.08
NUP88-210ENST00000574867 COL6A6A6NMZ7 2263 aa15.52■□□□□ 0.08
NUP88-210ENST00000574867 TRAPPC6AO75865 159 aa15.52■□□□□ 0.07
NUP88-210ENST00000574867 EPPINO95925 133 aa15.52■□□□□ 0.07
NUP88-210ENST00000574867 RGS8P57771 180 aaPredicted RBP15.52■□□□□ 0.07
NUP88-210ENST00000574867 TRAP1Q12931 704 aaKnown RBP15.52■□□□□ 0.07
NUP88-210ENST00000574867 ZSCAN26Q16670 478 aa15.52■□□□□ 0.07
NUP88-210ENST00000574867 GLYR1Q49A26 553 aaPredicted RBP15.52■□□□□ 0.07
NUP88-210ENST00000574867 CMPK2Q5EBM0 449 aa15.52■□□□□ 0.07
NUP88-210ENST00000574867 LCN8Q6JVE9 175 aa15.52■□□□□ 0.07
NUP88-210ENST00000574867 DHFR2Q86XF0 187 aa15.52■□□□□ 0.07
NUP88-210ENST00000574867 FAM83FQ8NEG4 500 aaPredicted RBP15.52■□□□□ 0.07
NUP88-210ENST00000574867 GPR119Q8TDV5 335 aa15.52■□□□□ 0.07
NUP88-210ENST00000574867 POP5Q969H6 163 aaKnown RBP15.52■□□□□ 0.07
NUP88-210ENST00000574867 ARHGDIGQ99819 225 aa15.52■□□□□ 0.07
NUP88-210ENST00000574867 SLX1AQ9BQ83 275 aa15.52■□□□□ 0.07
NUP88-210ENST00000574867 MED17Q9NVC6 651 aa15.52■□□□□ 0.07
NUP88-210ENST00000574867 TAS2R10Q9NYW0 307 aa15.52■□□□□ 0.07
NUP88-210ENST00000574867 TESQ9UGI8 421 aaKnown RBP15.52■□□□□ 0.07
NUP88-210ENST00000574867 C7orf72A4D263 438 aa15.51■□□□□ 0.07
NUP88-210ENST00000574867 ZNF682O95780 498 aa15.51■□□□□ 0.07
NUP88-210ENST00000574867 IGHG3P01860 377 aa15.51■□□□□ 0.07
NUP88-210ENST00000574867 LINGO3P0C6S8 592 aa15.51■□□□□ 0.07
NUP88-210ENST00000574867 NRF1Q16656 503 aa15.51■□□□□ 0.07
NUP88-210ENST00000574867 PLPPR5Q32ZL2 321 aa15.51■□□□□ 0.07
NUP88-210ENST00000574867 SOWAHCQ53LP3 525 aaPredicted RBP15.51■□□□□ 0.07
NUP88-210ENST00000574867 PRR30Q53SZ7 412 aaPredicted RBP15.51■□□□□ 0.07
NUP88-210ENST00000574867 COMTD1Q86VU5 262 aa15.51■□□□□ 0.07
NUP88-210ENST00000574867 OR14L1PQ8NHC6 308 aa15.51■□□□□ 0.07
NUP88-210ENST00000574867 CPT1CQ8TCG5 803 aa15.51■□□□□ 0.07
NUP88-210ENST00000574867 TMEM234Q8WY98 164 aa15.51■□□□□ 0.07
NUP88-210ENST00000574867 ST8SIA1Q92185 356 aa15.51■□□□□ 0.07
NUP88-210ENST00000574867 TPD52L3Q96J77 140 aa15.51■□□□□ 0.07
NUP88-210ENST00000574867 GPR137Q96N19 417 aa15.51■□□□□ 0.07
NUP88-210ENST00000574867 TRIM15Q9C019 465 aa15.51■□□□□ 0.07
NUP88-210ENST00000574867 ASF1BQ9NVP2 202 aa15.51■□□□□ 0.07
NUP88-210ENST00000574867 EIF4E1BA6NMX2 242 aaKnown RBP15.5■□□□□ 0.07
NUP88-210ENST00000574867 NPIPA5E9PKD4 350 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms