RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 UBTFL6P0CB48 400 aaPredicted RBP11.74□□□□□ -0.53
CLK3-224ENST00000568605 BMP2P12643 396 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 IL7RP16871 459 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 HOXB9P17482 250 aaPredicted RBP11.74□□□□□ -0.53
CLK3-224ENST00000568605 PGCP20142 388 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 ADH6P28332 368 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 TIMP3P35625 211 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 SLC6A8P48029 635 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 MVDP53602 400 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 CHRNEQ04844 493 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 SKP2Q13309 424 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 ZSWIM7Q19AV6 140 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 MMEL1Q495T6 779 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 COQ5Q5HYK3 327 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 PAGE3Q5JUK9 113 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 PDSS1Q5T2R2 415 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 GCNT6Q5T4J0 391 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 PRAMEF8Q5VWM4 474 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 PRAMEF7Q5VXH5 474 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 AP1ARQ63HQ0 302 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 CBLN3Q6UW01 205 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 P4HA3Q7Z4N8 544 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 GRAMD2AQ8IUY3 354 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 DPP10Q8N608 796 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 METTL25Q8N6Q8 603 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 FAM71CQ8NEG0 241 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 OR5W2Q8NH69 310 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 MBD3L2Q8NHZ7 208 aaPredicted RBP11.74□□□□□ -0.53
CLK3-224ENST00000568605 BBS10Q8TAM1 723 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 ST8SIA1Q92185 356 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 ARSGQ96EG1 525 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 LRRC46Q96FV0 321 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 MRGPRX4Q96LA9 322 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 RNF145Q96MT1 663 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 TUBA1CQ9BQE3 449 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 ARMC7Q9H6L4 198 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 MTHFD2LQ9H903 347 aaPredicted RBP11.74□□□□□ -0.53
CLK3-224ENST00000568605 EXOSC3Q9NQT5 275 aaKnown RBP11.74□□□□□ -0.53
CLK3-224ENST00000568605 PAQR5Q9NXK6 330 aaPredicted RBP11.74□□□□□ -0.53
CLK3-224ENST00000568605 VAPAQ9P0L0 249 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 GMEB1Q9Y692 573 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 CAPN7Q9Y6W3 813 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 A0A0G2JPF8 293 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 AGAP5A6NIR3 686 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 CLCA1A8K7I4 914 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 HNRNPCL2B2RXH8 293 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 HNRNPCL3B7ZW38 293 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 HNRNPCL1O60812 293 aaKnown RBP11.73□□□□□ -0.53
CLK3-224ENST00000568605 CCDC22O60826 627 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 LINGO3P0C6S8 592 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 HNRNPCL4P0DMR1 293 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 FCGR2AP12318 317 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 RPS4Y1P22090 263 aaKnown RBP11.73□□□□□ -0.53
CLK3-224ENST00000568605 HTR1EP28566 365 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 STARP49675 285 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 RNF144AP50876 292 aaPredicted RBP11.73□□□□□ -0.53
CLK3-224ENST00000568605 KCNJ10P78508 379 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 FOXF1Q12946 379 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 SELENBP1Q13228 472 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 NFYCQ13952 458 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 LARS2Q15031 903 aaKnown RBP11.73□□□□□ -0.53
CLK3-224ENST00000568605 TMEM44Q2T9K0 475 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 SLC25A35Q3KQZ1 300 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 LIN52Q52LA3 116 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 OLIG3Q7RTU3 272 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 ZNF440Q8IYI8 595 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 OR5M1Q8NGP8 315 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 SLC38A5Q8WUX1 472 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 C10orf82Q8WW14 230 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 TMEM19Q96HH6 336 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 TREX2Q9BQ50 279 aaPredicted RBP11.73□□□□□ -0.53
CLK3-224ENST00000568605 RUBCNLQ9H714 662 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 A4GALTQ9NPC4 353 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 KCNJ16Q9NPI9 418 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 SLC52A3Q9NQ40 469 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 SLC25A37Q9NYZ2 338 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 DSPPQ9NZW4 1301 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 KCNE5Q9UJ90 142 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 ZNF337Q9Y3M9 751 aa11.73□□□□□ -0.53
CLK3-224ENST00000568605 SETXQ7Z333 2677 aaKnown RBP11.73□□□□□ -0.53
CLK3-224ENST00000568605 TRBV5-3A0A0A0MS03 114 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 A0A0G2JNJ9 132 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 CENPVL1A0A0U1RR11 272 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 PRAMEF27A3QJZ7 478 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 SLC22A20A6NK97 555 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 FAM90A27PA6NNH2 459 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 C1QCP02747 245 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 THBS1P07996 1170 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 TFPTP0C1Z6 253 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 NID1P14543 1247 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 PRKCAP17252 672 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 PGM1P36871 562 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 RAC1P63000 192 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 EEF1A1P68104 462 aaKnown RBP11.72□□□□□ -0.53
CLK3-224ENST00000568605 SF3A3Q12874 501 aaKnown RBP eCLIP11.72□□□□□ -0.531e-6■■■■■ 38.4
CLK3-224ENST00000568605 KLF10Q13118 480 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 QPRTQ15274 297 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 MAPK14Q16539 360 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 SGCBQ16585 318 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 CYP51A1Q16850 503 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms