RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 DUS3LQ96G46 650 aaKnown RBP10.79□□□□□ -0.68
LDLR-212ENST00000560467 HSH2DQ96JZ2 352 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 ZNF354BQ96LW1 612 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 ZNF347Q96SE7 839 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 BDH2Q9BUT1 245 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 ZNF350Q9GZX5 532 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 NXF5Q9H1B4 397 aaKnown RBP10.79□□□□□ -0.68
LDLR-212ENST00000560467 VCXQ9H320 206 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 STX18Q9P2W9 335 aaKnown RBP10.79□□□□□ -0.68
LDLR-212ENST00000560467 YARS2Q9Y2Z4 477 aaKnown RBP10.79□□□□□ -0.68
LDLR-212ENST00000560467 SH3GLB1Q9Y371 365 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 KCNE3Q9Y6H6 103 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 AGAP5A6NIR3 686 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 GTPBP1O00178 669 aaKnown RBP10.78□□□□□ -0.68
LDLR-212ENST00000560467 FCMRO60667 390 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 NME6O75414 186 aaPredicted RBP10.78□□□□□ -0.68
LDLR-212ENST00000560467 KRT36O76013 467 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 MFN2O95140 757 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 PABPC4LP0CB38 370 aaKnown RBP10.78□□□□□ -0.68
LDLR-212ENST00000560467 CD96P40200 585 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 ATP12AP54707 1039 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 TLE4Q04727 773 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 SLC34A1Q06495 639 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 RPS26P11Q5JNZ5 115 aaPredicted RBP10.78□□□□□ -0.68
LDLR-212ENST00000560467 EXOSC6Q5RKV6 272 aaKnown RBP10.78□□□□□ -0.68
LDLR-212ENST00000560467 SPINK14Q6IE38 97 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 TYW3Q6IPR3 259 aaKnown RBP10.78□□□□□ -0.68
LDLR-212ENST00000560467 C3P1Q6ZMU1 363 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 NUP54Q7Z3B4 507 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 RANBP3LQ86VV4 465 aaPredicted RBP10.78□□□□□ -0.68
LDLR-212ENST00000560467 RPS19BP1Q86WX3 136 aaKnown RBP10.78□□□□□ -0.68
LDLR-212ENST00000560467 SIAH3Q8IW03 269 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 CMIPQ8IY22 773 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 TMEM156Q8N614 296 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 SMYD1Q8NB12 490 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 APCDD1LQ8NCL9 501 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 ELP5Q8TE02 316 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 DIO2Q92813 273 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 TAMM41Q96BW9 452 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 OMA1Q96E52 524 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 FRMD6Q96NE9 622 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 ADOQ96SZ5 270 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 TBL1XR1Q9BZK7 514 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 SAP130Q9H0E3 1048 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 SLC38A1Q9H2H9 487 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 RNPEPL1Q9HAU8 725 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 SDHAF3Q9NRP4 125 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 MYOTQ9UBF9 498 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 NPFFR2Q9Y5X5 522 aa10.78□□□□□ -0.68
LDLR-212ENST00000560467 TCRBV5S2A0A599 114 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 OR6C70A6NIJ9 312 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 WWP2O00308 870 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 SYT5O00445 386 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 KIAA0513O60268 411 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 TPST1O60507 370 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 E2F6O75461 281 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 OPN1SWP03999 348 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 CLPSP04118 112 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 FESP07332 822 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 ANPEPP15144 967 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 SOX18P35713 384 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 KCNJ5P48544 419 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 SSR4P51571 173 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 KRTCAP3Q53RY4 240 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 H3F3CQ6NXT2 135 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 DHRS4L2Q6PKH6 230 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 ENPP6Q6UWR7 440 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 SPNS3Q6ZMD2 512 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 MEX3BQ6ZN04 569 aaKnown RBP10.77□□□□□ -0.69
LDLR-212ENST00000560467 FRRS1Q6ZNA5 592 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 FGD2Q7Z6J4 655 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 ZDHHC21Q8IVQ6 265 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 CHERPQ8IWX8 916 aaKnown RBP10.77□□□□□ -0.69
LDLR-212ENST00000560467 ZNF440Q8IYI8 595 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 ADGRG5Q8IZF4 528 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 OR4N2Q8NGD1 307 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 FAM110BQ8TC76 370 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 ASB15Q8WXK1 588 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 EFHD2Q96C19 240 aaPredicted RBP10.77□□□□□ -0.69
LDLR-212ENST00000560467 C14orf79Q96F83 325 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 SCMH1Q96GD3 660 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 SPOCK3Q9BQ16 436 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 UTP23Q9BRU9 249 aaKnown RBP10.77□□□□□ -0.69
LDLR-212ENST00000560467 IL1RAPQ9NPH3 570 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 SELENONQ9NZV5 590 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 SLC35A3Q9Y2D2 325 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 DTX4Q9Y2E6 619 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 DTNAQ9Y4J8 743 aa10.77□□□□□ -0.69
LDLR-212ENST00000560467 CDK2AP1O14519 115 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 AP3D1O14617 1153 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 ADAM10O14672 748 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 CLOCKO15516 846 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 PPM1BO75688 479 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 OR2J2O76002 312 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 UTS2O95399 124 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 CST1P01037 141 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 NID1P14543 1247 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 CD46P15529 392 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 ABOP16442 354 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 TBXA2RP21731 343 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms