RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 HNRNPCL3B7ZW38 293 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 SHISA8B8ZZ34 492 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 H0Y3Z8 333 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 HNRNPCL1O60812 293 aaKnown RBP12.29□□□□□ -0.44
SHMT2-228ENST00000557302 NPPAP01160 153 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 UBTFL6P0CB48 400 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-228ENST00000557302 HNRNPCL4P0DMR1 293 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 ARAFP10398 606 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 PEPDP12955 493 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 CPN1P15169 458 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 IL7RP16871 459 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 RPS4Y1P22090 263 aaKnown RBP12.29□□□□□ -0.44
SHMT2-228ENST00000557302 PGM1P36871 562 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 EIF1P41567 113 aaKnown RBP12.29□□□□□ -0.44
SHMT2-228ENST00000557302 STARP49675 285 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 LHX2P50458 406 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 MTPNP58546 118 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 CBFBQ13951 182 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 BCL2A1Q16548 175 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 TMEM44Q2T9K0 475 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 PLPPR5Q32ZL2 321 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 RTL6Q6ICC9 239 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 NCCRP1Q6ZVX7 275 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-228ENST00000557302 C10orf111Q8N326 155 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 GTPBP8Q8N3Z3 284 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-228ENST00000557302 RPRMLQ8N4K4 120 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 MARVELD2Q8N4S9 558 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 METTL25Q8N6Q8 603 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 FAM71CQ8NEG0 241 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 OR52P1PQ8NH57 321 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 OR5W2Q8NH69 310 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 RP9Q8TA86 221 aaKnown RBP12.29□□□□□ -0.44
SHMT2-228ENST00000557302 BBS10Q8TAM1 723 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 ARSGQ96EG1 525 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 KLHDC3Q9BQ90 382 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 CCDC106Q9BWC9 280 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 TMEM38AQ9H6F2 299 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 BCL2L10Q9HD36 194 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 METRNQ9UJH8 293 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 ZNF337Q9Y3M9 751 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 FAM215AQ9Y5M1 114 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 DOPEY2Q9Y3R5 2298 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 CLDN24A6NM45 220 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 H3BML4 177 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 LINGO3P0C6S8 592 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 COX4I1P13073 169 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 NID1P14543 1247 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 ZNF708P17019 499 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 CLDN18P56856 261 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 ADORA2A-AS1P86434 159 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 CDK6Q00534 326 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 SRYQ05066 204 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 SCARB2Q14108 478 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 SELPLGQ14242 412 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 CYP51A1Q16850 503 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 ACSF3Q4G176 576 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-228ENST00000557302 LIN52Q52LA3 116 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 REEP3Q6NUK4 255 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 MEIOBQ8N635 442 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 POU5F2Q8N7G0 328 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 NFKBIDQ8NI38 313 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 GPR119Q8TDV5 335 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 LRRC58Q96CX6 371 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 RCN3Q96D15 328 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 RNF145Q96MT1 663 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 SH3GL1Q99961 368 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 SLC39A3Q9BRY0 314 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 TTYH2Q9BSA4 534 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 TRIM8Q9BZR9 551 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 MYLK2Q9H1R3 596 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 EXOSC3Q9NQT5 275 aaKnown RBP12.28□□□□□ -0.44
SHMT2-228ENST00000557302 GID8Q9NWU2 228 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 STOML1Q9UBI4 398 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 ARL2BPQ9Y2Y0 163 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 AP4B1Q9Y6B7 739 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 PCNX1Q96RV3 2341 aa12.28□□□□□ -0.44
SHMT2-228ENST00000557302 FXYD1O00168 92 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 BCAS1O75363 584 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-228ENST00000557302 PGM3O95394 542 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 THBS1P07996 1170 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 GLI4P10075 376 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 PGCP20142 388 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 SLC6A2P23975 617 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 NUP107P57740 925 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 RBBP4Q09028 425 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 PMPCAQ10713 525 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 FOXF1Q12946 379 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 LARS2Q15031 903 aaKnown RBP12.27□□□□□ -0.45
SHMT2-228ENST00000557302 QPRTQ15274 297 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 TOMM34Q15785 309 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-228ENST00000557302 ADRM1Q16186 407 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 MRPL2Q5T653 305 aaKnown RBP12.27□□□□□ -0.45
SHMT2-228ENST00000557302 NANOGP8Q6NSW7 305 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 ZNF836Q6ZNA1 936 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 PIGWQ7Z7B1 504 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 MRGPRGQ86SM5 289 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 VRK2Q86Y07 508 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 KRT73Q86Y46 540 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 TREML1Q86YW5 311 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 UBQLNLQ8IYU4 475 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms