RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 IL6P05231 212 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 PRKCAP17252 672 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 IL11P20809 199 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 ANXA11P50995 505 aaKnown RBP14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 FUT5Q11128 374 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 FOXF1Q12946 379 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 SKP2Q13309 424 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 PDZK1Q5T2W1 519 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 FAM214BQ7L5A3 538 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 C16orf62Q7Z3J2 963 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 CLEC4FQ8N1N0 589 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 OR10D3Q8NH80 312 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 OR2V1Q8NHB1 315 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 GPR119Q8TDV5 335 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 PMM1Q92871 262 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 NINJ1Q92982 152 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 ARL8AQ96BM9 186 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 ZBTB9Q96C00 473 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 GMPPAQ96IJ6 420 aaPredicted RBP14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 ZNF845Q96IR2 970 aaPredicted RBP14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 ATP6V1G3Q96LB4 118 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 KLHL15Q96M94 604 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 ZBTB18Q99592 522 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 SLC35A5Q9BS91 424 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 LAT2Q9GZY6 243 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 KCNE5Q9UJ90 142 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 MCTS1Q9ULC4 181 aaKnown RBP14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 LIPT1Q9Y234 373 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 CARD8Q9Y2G2 431 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 NPIPA5A0A0B4J1W7 369 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 GOLGA8QA0A0J9YX86 632 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 GOLGA8OA6NCC3 632 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 CCDC154A6NI56 674 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 GJE1A6NN92 205 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 NPIPA7E9PJI5 369 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 GOLGA8NF8WBI6 632 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 GTPBP1O00178 669 aaKnown RBP14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 GMFGO60234 142 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 FCMRO60667 390 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 SS18L1O75177 396 aaPredicted RBP14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 AQP8O94778 261 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 TGDSO95455 350 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 ZCCHC18P0CG32 403 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 NPIPA8P0DM63 369 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 EIF1AXP47813 144 aaKnown RBP14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 CPA2P48052 419 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 CBFBQ13951 182 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 SGCBQ16585 318 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 SLC9B1Q4ZJI4 515 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 PDSS1Q5T2R2 415 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 TYW3Q6IPR3 259 aaKnown RBP14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 VWA1Q6PCB0 445 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 OR6K3Q8NGY3 331 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 ST8SIA1Q92185 356 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 SMPDL3BQ92485 455 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 ROPN1LQ96C74 230 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 TRNT1Q96Q11 434 aaKnown RBP14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 OR52E6Q96RD3 313 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 PANX1Q96RD7 426 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 VIPAS39Q9H9C1 493 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 GP6Q9HCN6 339 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 EXOSC3Q9NQT5 275 aaKnown RBP14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 ELOVL5Q9NYP7 299 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 PRDM4Q9UKN5 801 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 SLC35A3Q9Y2D2 325 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 WDR45Q9Y484 360 aa14.39□□□□□ -0.11
CCDC88C-209ENST00000554872 A0A0J9YW62 118 aa14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 HMGN4O00479 90 aa14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 SLC22A3O75751 556 aa14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 CPSF4O95639 269 aaKnown RBP14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 OR12D1P0DN82 309 aa14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 KITP10721 976 aa14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 CHI3L1P36222 383 aaPredicted RBP14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 IRX1P78414 480 aaPredicted RBP14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 SELENBP1Q13228 472 aa14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 EPGNQ6UW88 154 aa14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 SPNS3Q6ZMD2 512 aa14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 FRRS1Q6ZNA5 592 aa14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 EIF3MQ7L2H7 374 aaKnown RBP14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 BTLAQ7Z6A9 289 aa14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 LUZP2Q86TE4 346 aa14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 CMIPQ8IY22 773 aa14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 LILRA2Q8N149 483 aa14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 ZNF619Q8N2I2 560 aa14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 CNEP1R1Q8N9A8 125 aa14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 STON2Q8WXE9 905 aa14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 CPNE4Q96A23 557 aaPredicted RBP14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 CLEC4MQ9H2X3 399 aaPredicted RBP14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 DNAJB12Q9NXW2 375 aaKnown RBP14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 MKLN1Q9UL63 735 aa14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 TESMINQ9Y4I5 508 aa14.38□□□□□ -0.11
CCDC88C-209ENST00000554872 CENPVL1A0A0U1RR11 272 aa14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 PRAMEF27A3QJZ7 478 aa14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 SH3D21A4FU49 640 aa14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 EFNA2O43921 213 aa14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 SYNGR4O95473 234 aa14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 NUDT14O95848 222 aa14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 CSTAP01040 98 aa14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 PABPC4LP0CB38 370 aaKnown RBP14.37□□□□□ -0.11
CCDC88C-209ENST00000554872 PGM1P36871 562 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 98.8 ms