RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 PINK1Q9BXM7 581 aa13.82□□□□□ -0.2
SHMT2-204ENST00000553324 TIGARQ9NQ88 270 aa13.82□□□□□ -0.2
SHMT2-204ENST00000553324 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-204ENST00000553324 KCNN3Q9UGI6 736 aa13.82□□□□□ -0.2
SHMT2-204ENST00000553324 PRDM4Q9UKN5 801 aa13.82□□□□□ -0.2
SHMT2-204ENST00000553324 NOTCH2Q04721 2471 aa13.82□□□□□ -0.2
SHMT2-204ENST00000553324 TMEM247A6NEH6 219 aa13.81□□□□□ -0.2
SHMT2-204ENST00000553324 EIF1AYO14602 144 aaKnown RBP13.81□□□□□ -0.2
SHMT2-204ENST00000553324 ADAMDEC1O15204 470 aa13.81□□□□□ -0.2
SHMT2-204ENST00000553324 TGM6O95932 706 aa13.81□□□□□ -0.2
SHMT2-204ENST00000553324 NR2F1P10589 423 aa13.81□□□□□ -0.2
SHMT2-204ENST00000553324 FCGR2AP12318 317 aa13.81□□□□□ -0.2
SHMT2-204ENST00000553324 PSMA4P25789 261 aaKnown RBP13.81□□□□□ -0.2
SHMT2-204ENST00000553324 TIGD2Q4W5G0 525 aa13.81□□□□□ -0.2
SHMT2-204ENST00000553324 GTF2IRD2BQ6EKJ0 949 aa13.81□□□□□ -0.2
SHMT2-204ENST00000553324 BLOC1S3Q6QNY0 202 aa13.81□□□□□ -0.2
SHMT2-204ENST00000553324 GTF2IRD2Q86UP8 949 aa13.81□□□□□ -0.2
SHMT2-204ENST00000553324 LILRA2Q8N149 483 aa13.81□□□□□ -0.2
SHMT2-204ENST00000553324 RELL2Q8NC24 303 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-204ENST00000553324 OR9I1Q8NGQ6 314 aa13.81□□□□□ -0.2
SHMT2-204ENST00000553324 TMEM234Q8WY98 164 aa13.81□□□□□ -0.2
SHMT2-204ENST00000553324 GTF2H4Q92759 462 aa13.81□□□□□ -0.2
SHMT2-204ENST00000553324 VPS33AQ96AX1 596 aa13.81□□□□□ -0.2
SHMT2-204ENST00000553324 PRRG4Q9BZD6 226 aa13.81□□□□□ -0.2
SHMT2-204ENST00000553324 TRIM8Q9BZR9 551 aa13.81□□□□□ -0.2
SHMT2-204ENST00000553324 RAD21L1Q9H4I0 556 aa13.81□□□□□ -0.2
SHMT2-204ENST00000553324 TPT1P8Q9HAU6 139 aa13.81□□□□□ -0.2
SHMT2-204ENST00000553324 CALML5Q9NZT1 146 aa13.81□□□□□ -0.2
SHMT2-204ENST00000553324 JKAMPQ9P055 326 aa13.81□□□□□ -0.2
SHMT2-204ENST00000553324 CCDC167Q9P0B6 97 aa13.81□□□□□ -0.2
SHMT2-204ENST00000553324 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 SHISA8B8ZZ34 492 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 EDF1O60869 148 aaKnown RBP13.8□□□□□ -0.2
SHMT2-204ENST00000553324 DNAJA2O60884 412 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 CYP7B1O75881 506 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 H6PDO95479 791 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 PRF1P14222 555 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 PGCP20142 388 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 UQCRC1P31930 480 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 CRATP43155 626 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 EIF1AXP47813 144 aaKnown RBP13.8□□□□□ -0.2
SHMT2-204ENST00000553324 KCNJ10P78508 379 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 CHRNEQ04844 493 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 SQLEQ14534 574 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 PON3Q15166 354 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 SLC25A53Q5H9E4 307 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 METTL21CQ5VZV1 264 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 FRRS1Q6ZNA5 592 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 GGNQ86UU5 652 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 CMIPQ8IY22 773 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 ZNF295-AS1Q8N0V1 137 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 TMCO5AQ8N6Q1 288 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 RFWD2Q8NHY2 731 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 POC1BQ8TC44 478 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 ST8SIA1Q92185 356 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 RNF122Q9H9V4 155 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 MRGBPQ9NV56 204 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 P2RX2Q9UBL9 471 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 KCNE5Q9UJ90 142 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 MCTS1Q9ULC4 181 aaKnown RBP13.8□□□□□ -0.2
SHMT2-204ENST00000553324 L3MBTL1Q9Y468 752 aa13.8□□□□□ -0.2
SHMT2-204ENST00000553324 NAV2Q8IVL1 2488 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 EEF1E1-BLOC1S5C9J1V9 151 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 H0YC42 278 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 ETV2O00321 342 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-204ENST00000553324 EEF1E1O43324 174 aaKnown RBP13.79□□□□□ -0.2
SHMT2-204ENST00000553324 ATP8B1O43520 1251 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 SYNGR4O95473 234 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 PABPC4LP0CB38 370 aaKnown RBP13.79□□□□□ -0.2
SHMT2-204ENST00000553324 UBTFL6P0CB48 400 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-204ENST00000553324 PRKCAP17252 672 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 NCF2P19878 526 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-204ENST00000553324 CAPN3P20807 821 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 FKBP2P26885 142 aaKnown RBP13.79□□□□□ -0.2
SHMT2-204ENST00000553324 PGM1P36871 562 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 KIR2DL3P43628 341 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 SLC6A8P48029 635 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 CCR4P51679 360 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 AGFG1P52594 562 aaKnown RBP13.79□□□□□ -0.2
SHMT2-204ENST00000553324 TPD52P55327 224 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-204ENST00000553324 CARD18P57730 90 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 FUT5Q11128 374 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 FOXF2Q12947 444 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 SKP2Q13309 424 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 MAPK14Q16539 360 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 SYPL1Q16563 259 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 ZSWIM7Q19AV6 140 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 COX20Q5RI15 118 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 FUNDC1Q8IVP5 155 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 PEX5LQ8IYB4 626 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 OR10D3Q8NH80 312 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 OR2V1Q8NHB1 315 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 FBXO27Q8NI29 283 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 FNDC9Q8TBE3 224 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 PNPT1Q8TCS8 783 aaKnown RBP13.79□□□□□ -0.2
SHMT2-204ENST00000553324 FIG4Q92562 907 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 ZG16BQ96DA0 208 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 SPDL1Q96EA4 605 aa13.79□□□□□ -0.2
SHMT2-204ENST00000553324 REXO5Q96IC2 774 aaKnown RBP13.79□□□□□ -0.2
SHMT2-204ENST00000553324 KLHL15Q96M94 604 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms