RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 STARP49675 285 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 PPT1P50897 306 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 RAB40BQ12829 278 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 CHIT1Q13231 466 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 GPM6BQ13491 265 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 WSCD1Q658N2 575 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 FAHD2BQ6P2I3 314 aaPredicted RBP3.1□□□□□ -1.91
VPS29-205ENST00000548539 P2RY8Q86VZ1 359 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 ZNF683Q8IZ20 524 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 CLDN19Q8N6F1 224 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 FAM133AQ8N9E0 248 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 AENQ8WTP8 325 aaKnown RBP3.1□□□□□ -1.91
VPS29-205ENST00000548539 RLN3Q8WXF3 142 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 PELI1Q96FA3 418 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 FAHD2AQ96GK7 314 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 VSIG2Q96IQ7 327 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 MS4A14Q96JA4 679 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 SIGLEC12Q96PQ1 595 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 SPRR3Q9UBC9 169 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 ZNF221Q9UK13 617 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 MEMO1Q9Y316 297 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 FRMPD4Q14CM0 1322 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 C15orf38-AP3S2A0A0A6YYH1 394 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 KIF2AO00139 706 aaPredicted RBP3.09□□□□□ -1.91
VPS29-205ENST00000548539 BTN3A3O00478 584 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 OR7A17O14581 309 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 CDX4O14627 284 aaPredicted RBP3.09□□□□□ -1.91
VPS29-205ENST00000548539 ARPC3O15145 178 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 NUDT21O43809 227 aaKnown RBP3.09□□□□□ -1.91
VPS29-205ENST00000548539 TPST2O60704 377 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 CCDC166P0CW27 439 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 VDAC1P21796 283 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 LAP3P28838 519 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 ADORA2BP29275 332 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 RPL29P47914 159 aaKnown RBP3.09□□□□□ -1.91
VPS29-205ENST00000548539 AP3M2P53677 418 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 KRTAP12-2P59991 146 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 RPS8P62241 208 aaKnown RBP3.09□□□□□ -1.91
VPS29-205ENST00000548539 RPL32P62910 135 aaKnown RBP3.09□□□□□ -1.91
VPS29-205ENST00000548539 RIPPLY1Q0D2K3 151 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 TP53I3Q53FA7 332 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 SLC25A30Q5SVS4 291 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 FAM71F2Q6NXP2 309 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 FAM199XQ6PEV8 388 aaPredicted RBP3.09□□□□□ -1.91
VPS29-205ENST00000548539 KDELC1Q6UW63 502 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 SYT10Q6XYQ8 523 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 C16orf62Q7Z3J2 963 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 CLEC4FQ8N1N0 589 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 ATP6V0D2Q8N8Y2 350 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 SYT14Q8NB59 555 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 STEAP2Q8NFT2 490 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 SLC5A11Q8WWX8 675 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 CELF6Q96J87 481 aaKnown RBP3.09□□□□□ -1.91
VPS29-205ENST00000548539 DPH7Q9BTV6 452 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 SPATA16Q9BXB7 569 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 VCX2Q9H322 139 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 PPDPFQ9H3Y8 114 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 GLIPR2Q9H4G4 154 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 SLC7A10Q9NS82 523 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 SIGLEC8Q9NYZ4 499 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 IL36GQ9NZH8 169 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 Q9UF83 564 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 RIMS3Q9UJD0 308 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 CLEC4AQ9UMR7 237 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 SAMD4AQ9UPU9 718 aaKnown RBP3.09□□□□□ -1.91
VPS29-205ENST00000548539 PDE10AQ9Y233 779 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 MAB21L2Q9Y586 359 aa3.09□□□□□ -1.91
VPS29-205ENST00000548539 ANKRD30BQ9BXX2 1392 aa3.09□□□□□ -1.92
VPS29-205ENST00000548539 ATAD2BQ9ULI0 1458 aa3.09□□□□□ -1.92
VPS29-205ENST00000548539 LOC100131303A0A0U1RQF7 123 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 CLRN2A0PK11 232 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 LRP5LA4QPB2 252 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 VSTM2BA6NLU5 285 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 PHOX2AO14813 284 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 SNNO75324 88 aaPredicted RBP3.08□□□□□ -1.92
VPS29-205ENST00000548539 GIG44P09565 113 aaPredicted RBP3.08□□□□□ -1.92
VPS29-205ENST00000548539 EPHX2P34913 555 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 RDXP35241 583 aaKnown RBP3.08□□□□□ -1.92
VPS29-205ENST00000548539 HSPA2P54652 639 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 MRPS11P82912 194 aaKnown RBP3.08□□□□□ -1.92
VPS29-205ENST00000548539 TMEM225Q6GV28 225 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 CENPPQ6IPU0 288 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 VITQ6UXI7 678 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 CCDC80Q76M96 950 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 MOB3BQ86TA1 216 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 VSTM4Q8IW00 320 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 UBQLNLQ8IYU4 475 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 CNPY4Q8N129 248 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 MTURNQ8N3F0 131 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 KIR3DL3Q8N743 410 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 C15orf54Q8N8G6 183 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 OR4D5Q8NGN0 318 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 OR1F12Q8NHA8 337 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 TGM7Q96PF1 710 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 PSKH2Q96QS6 385 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 GON7Q9BXV9 100 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 DEFB126Q9BYW3 111 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 AIPL1Q9NZN9 384 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 WRAP73Q9P2S5 460 aaPredicted RBP3.08□□□□□ -1.92
VPS29-205ENST00000548539 PCSK1NQ9UHG2 260 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms