RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 TMEM108Q6UXF1 575 aa11.23□□□□□ -0.61
SCAF11-208ENST00000546534 C12orf54Q6X4T0 127 aa11.23□□□□□ -0.61
SCAF11-208ENST00000546534 SSX8Q7RTT4 187 aa11.23□□□□□ -0.61
SCAF11-208ENST00000546534 ZAR1Q86SH2 424 aa11.23□□□□□ -0.61
SCAF11-208ENST00000546534 P2RY8Q86VZ1 359 aa11.23□□□□□ -0.61
SCAF11-208ENST00000546534 CDC26Q8NHZ8 85 aa11.23□□□□□ -0.61
SCAF11-208ENST00000546534 GPR151Q8TDV0 419 aa11.23□□□□□ -0.61
SCAF11-208ENST00000546534 ZNF775Q96BV0 537 aaPredicted RBP11.23□□□□□ -0.61
SCAF11-208ENST00000546534 AMDHD1Q96NU7 426 aa11.23□□□□□ -0.61
SCAF11-208ENST00000546534 COQ10BQ9H8M1 238 aa11.23□□□□□ -0.61
SCAF11-208ENST00000546534 BCO1Q9HAY6 547 aa11.23□□□□□ -0.61
SCAF11-208ENST00000546534 TAS2R7Q9NYW3 318 aa11.23□□□□□ -0.61
SCAF11-208ENST00000546534 NFU1Q9UMS0 254 aa11.23□□□□□ -0.61
SCAF11-208ENST00000546534 TTC36A6NLP5 189 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 ZNF195O14628 629 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 TCF21O43680 179 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 ULK1O75385 1050 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 NKX2-2O95096 273 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 DHRS4L1P0CG22 281 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 APEHP13798 732 aaKnown RBP11.22□□□□□ -0.61
SCAF11-208ENST00000546534 ITGA2P17301 1181 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 COX5AP20674 150 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 PTAFRP25105 342 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 ELK4P28324 431 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 NTSP30990 170 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 MAP3K8P41279 467 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 EIF1P41567 113 aaKnown RBP11.22□□□□□ -0.61
SCAF11-208ENST00000546534 PLTPP55058 493 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 GUCY2DQ02846 1103 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 CLCQ05315 142 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 CD226Q15762 336 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 CR1LQ2VPA4 569 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 SLC43A2Q8N370 569 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 RFLNBQ8N5W9 214 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.22□□□□□ -0.61
SCAF11-208ENST00000546534 B4GALNT2Q8NHY0 566 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 C3orf49Q96BT1 292 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 PSD2Q9BQI7 771 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 C1QTNF3Q9BXJ4 246 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 C12orf65Q9H3J6 166 aaKnown RBP11.22□□□□□ -0.61
SCAF11-208ENST00000546534 MIEF1Q9NQG6 463 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 PLCE1Q9P212 2302 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 GMPR2Q9P2T1 348 aaKnown RBP11.22□□□□□ -0.61
SCAF11-208ENST00000546534 GRID1Q9ULK0 1009 aa11.22□□□□□ -0.61
SCAF11-208ENST00000546534 IGHV4-61A0A0C4DH41 118 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 ESYT3A0FGR9 886 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 A8MT66 165 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 RGS14O43566 566 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 TGFAP01135 160 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 SBK3P0C264 359 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 CD40P25942 277 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 HMOX2P30519 316 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 PAFAH1B1P43034 410 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 NR4A2P43354 598 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 GSTM5P46439 218 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 PDLIM4P50479 330 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 ZNF763Q0D2J5 394 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 RASA2Q15283 850 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 TRADDQ15628 312 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 VPS26BQ4G0F5 336 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 ARL13AQ5H913 290 aaPredicted RBP11.21□□□□□ -0.61
SCAF11-208ENST00000546534 FAM71E1Q6IPT2 247 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 ZNF544Q6NX49 715 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 MISPQ8IVT2 679 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 MMGT1Q8N4V1 131 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 ZNF433Q8N7K0 673 aaPredicted RBP11.21□□□□□ -0.61
SCAF11-208ENST00000546534 ATP6V1C2Q8NEY4 427 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 OR52N5Q8NH56 324 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 FBXO27Q8NI29 283 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.21□□□□□ -0.61
SCAF11-208ENST00000546534 RNF217Q8TC41 542 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 FAM110BQ8TC76 370 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 METTL6Q8TCB7 284 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 FBXO25Q8TCJ0 367 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 HOXB13Q92826 284 aaPredicted RBP11.21□□□□□ -0.61
SCAF11-208ENST00000546534 ZNF300Q96RE9 604 aaPredicted RBP11.21□□□□□ -0.61
SCAF11-208ENST00000546534 ADAM19Q9H013 955 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 KLHL9Q9P2J3 617 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 SAR1BQ9Y6B6 198 aa11.21□□□□□ -0.61
SCAF11-208ENST00000546534 A0A1W2PR80 420 aa11.2□□□□□ -0.62
SCAF11-208ENST00000546534 A6NJY4 79 aa11.2□□□□□ -0.62
SCAF11-208ENST00000546534 GJE1A6NN92 205 aa11.2□□□□□ -0.62
SCAF11-208ENST00000546534 RAD51CO43502 376 aa11.2□□□□□ -0.62
SCAF11-208ENST00000546534 RAD51DO75771 328 aa11.2□□□□□ -0.62
SCAF11-208ENST00000546534 KCNK2O95069 426 aa11.2□□□□□ -0.62
SCAF11-208ENST00000546534 ACP2P11117 423 aa11.2□□□□□ -0.62
SCAF11-208ENST00000546534 PRPS2P11908 318 aa11.2□□□□□ -0.62
SCAF11-208ENST00000546534 HPGDP15428 266 aa11.2□□□□□ -0.62
SCAF11-208ENST00000546534 EGR1P18146 543 aa11.2□□□□□ -0.62
SCAF11-208ENST00000546534 MAGEA12P43365 314 aa11.2□□□□□ -0.62
SCAF11-208ENST00000546534 RAC3P60763 192 aa11.2□□□□□ -0.62
SCAF11-208ENST00000546534 ZNF117Q03924 483 aa11.2□□□□□ -0.62
SCAF11-208ENST00000546534 CHRNEQ04844 493 aa11.2□□□□□ -0.62
SCAF11-208ENST00000546534 CHRNB3Q05901 458 aa11.2□□□□□ -0.62
SCAF11-208ENST00000546534 RASGEF1BQ0VAM2 473 aa11.2□□□□□ -0.62
SCAF11-208ENST00000546534 TSNAXIP1Q2TAA8 658 aa11.2□□□□□ -0.62
SCAF11-208ENST00000546534 KLHL17Q6TDP4 642 aa11.2□□□□□ -0.62
SCAF11-208ENST00000546534 GPRIN3Q6ZVF9 776 aa11.2□□□□□ -0.62
SCAF11-208ENST00000546534 ZNF551Q7Z340 670 aaPredicted RBP11.2□□□□□ -0.62
SCAF11-208ENST00000546534 ZNF100Q8IYN0 542 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms