RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 CAVIN3Q969G5 261 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 ZBTB8AQ96BR9 441 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 FAM120BQ96EK7 910 aaKnown RBP7.56□□□□□ -1.2
USP28-215ENST00000545608 MS4A4EQ96PG1 132 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 IQCGQ9H095 443 aaKnown RBP7.56□□□□□ -1.2
USP28-215ENST00000545608 UBQLN4Q9NRR5 601 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 STOML1Q9UBI4 398 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 GIMAP2Q9UG22 337 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 ATP6V1HQ9UI12 483 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 MCTS1Q9ULC4 181 aaKnown RBP7.56□□□□□ -1.2
USP28-215ENST00000545608 ROS1P08922 2347 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 NPIPA5A0A0B4J1W7 369 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 A0A1W2PQD3 144 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 NPIPA7E9PJI5 369 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 SCDO00767 359 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 PIP5K1BO14986 540 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 NTN1O95631 604 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 CHEK2O96017 543 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 HMGN2P05204 90 aaKnown RBP7.55□□□□□ -1.2
USP28-215ENST00000545608 FGF4P08620 206 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 LINGO3P0C6S8 592 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 NPIPA8P0DM63 369 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 NEFHP12036 1026 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 BCKDHAP12694 445 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 NID1P14543 1247 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 HPGDP15428 266 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 PPP3CBP16298 524 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 ALDH3A1P30838 453 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 LCN1P31025 176 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 ASMTP46597 345 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 PTH2RP49190 550 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 PRIM2P49643 509 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 ZNF41P51814 821 aaPredicted RBP7.55□□□□□ -1.2
USP28-215ENST00000545608 POU6F2P78424 691 aaPredicted RBP7.55□□□□□ -1.2
USP28-215ENST00000545608 LASP1Q14847 261 aaKnown RBP7.55□□□□□ -1.2
USP28-215ENST00000545608 MLC1Q15049 377 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 ARL13AQ5H913 290 aaPredicted RBP7.55□□□□□ -1.2
USP28-215ENST00000545608 HBMQ6B0K9 141 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 CBLN3Q6UW01 205 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 LRIG3Q6UXM1 1119 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 ZNF704Q6ZNC4 412 aaPredicted RBP7.55□□□□□ -1.2
USP28-215ENST00000545608 BEND4Q6ZU67 534 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 ESPNLQ6ZVH7 1005 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 PLEKHM3Q6ZWE6 761 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 TRABD2AQ86V40 505 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 WFDC8Q8IUA0 241 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 MISPQ8IVT2 679 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 DDIASQ8IXT1 998 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 LILRA2Q8N149 483 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 OR7A2PQ8NGA2 310 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 TWIST2Q8WVJ9 160 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 JADE3Q92613 823 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 CDS1Q92903 461 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 ZNF524Q96C55 264 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 MTERF3Q96E29 417 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 PLPPR2Q96GM1 343 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 KLHL15Q96M94 604 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 TRMOQ9BU70 441 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 BDH2Q9BUT1 245 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 BTBD2Q9BX70 525 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 ACTR6Q9GZN1 396 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 ADAM19Q9H013 955 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 PIGUQ9H490 435 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 GLRX2Q9NS18 164 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 ZCCHC3Q9NUD5 404 aaKnown RBP7.55□□□□□ -1.2
USP28-215ENST00000545608 PAQR5Q9NXK6 330 aaPredicted RBP7.55□□□□□ -1.2
USP28-215ENST00000545608 GIN1Q9NXP7 522 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 FRRS1LQ9P0K9 344 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 MID2Q9UJV3 735 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 GPR52Q9Y2T5 361 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 TMED5Q9Y3A6 229 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 TRAF6Q9Y4K3 522 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 KCNE3Q9Y6H6 103 aa7.55□□□□□ -1.2
USP28-215ENST00000545608 CSPG4Q6UVK1 2322 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 TLDC2A0PJX2 215 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 ERICH4A6NGS2 130 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 ADARB2-AS1A8MUL3 147 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 FAM171A2A8MVW0 826 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 ZNF195O14628 629 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 SCAMP2O15127 329 aaKnown RBP7.54□□□□□ -1.2
USP28-215ENST00000545608 NPHS1O60500 1241 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 EIF4EBP3O60516 100 aaPredicted RBP7.54□□□□□ -1.2
USP28-215ENST00000545608 PEX11AO75192 247 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 CNOT4O95628 575 aaKnown RBP7.54□□□□□ -1.2
USP28-215ENST00000545608 LAMP1P11279 417 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 PSMB1P20618 241 aaKnown RBP7.54□□□□□ -1.2
USP28-215ENST00000545608 AGTR1P30556 359 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 ARRB2P32121 409 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 SFTPDP35247 375 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 MAP2K3P46734 347 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 CARD18P57730 90 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 ZNF117Q03924 483 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 ZNF844Q08AG5 666 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 FOXF1Q12946 379 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 TSC22D1Q15714 1073 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 TOMM34Q15785 309 aaPredicted RBP7.54□□□□□ -1.2
USP28-215ENST00000545608 NDUFAF6Q330K2 333 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 KLHL26Q53HC5 615 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 PDSS1Q5T2R2 415 aa7.54□□□□□ -1.2
USP28-215ENST00000545608 CDC73Q6P1J9 531 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms