RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, human

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC4-216	ENST00000544989	ZNF614	Q8N883	585 aa		10.64	□□□□□ -0.71
HDAC4-216	ENST00000544989	OR5W2	Q8NH69	310 aa		10.64	□□□□□ -0.71
HDAC4-216	ENST00000544989	FAM222B	Q8WU58	562 aa		10.64	□□□□□ -0.71
HDAC4-216	ENST00000544989	STON2	Q8WXE9	905 aa		10.64	□□□□□ -0.71
HDAC4-216	ENST00000544989	ARSG	Q96EG1	525 aa		10.64	□□□□□ -0.71
HDAC4-216	ENST00000544989	ITCH	Q96J02	903 aa		10.64	□□□□□ -0.71
HDAC4-216	ENST00000544989	MRGPRX4	Q96LA9	322 aa		10.64	□□□□□ -0.71
HDAC4-216	ENST00000544989	TEX37	Q96LM6	180 aa		10.64	□□□□□ -0.71
HDAC4-216	ENST00000544989	LURAP1	Q96LR2	239 aa		10.64	□□□□□ -0.71
HDAC4-216	ENST00000544989	TRNT1	Q96Q11	434 aa	Known RBP	10.64	□□□□□ -0.71
HDAC4-216	ENST00000544989	CCDC28B	Q9BUN5	200 aa		10.64	□□□□□ -0.71
HDAC4-216	ENST00000544989	PINK1	Q9BXM7	581 aa		10.64	□□□□□ -0.71
HDAC4-216	ENST00000544989	LAT2	Q9GZY6	243 aa		10.64	□□□□□ -0.71
HDAC4-216	ENST00000544989	SAP130	Q9H0E3	1048 aa		10.64	□□□□□ -0.71
HDAC4-216	ENST00000544989	FANCF	Q9NPI8	374 aa		10.64	□□□□□ -0.71
HDAC4-216	ENST00000544989	TCF7L2	Q9NQB0	619 aa		10.64	□□□□□ -0.71
HDAC4-216	ENST00000544989	ICAM5	Q9UMF0	924 aa		10.64	□□□□□ -0.71
HDAC4-216	ENST00000544989	CARD8	Q9Y2G2	431 aa		10.64	□□□□□ -0.71
HDAC4-216	ENST00000544989	L3MBTL1	Q9Y468	752 aa		10.64	□□□□□ -0.71
HDAC4-216	ENST00000544989	WDR45	Q9Y484	360 aa		10.64	□□□□□ -0.71
HDAC4-216	ENST00000544989	KCNE3	Q9Y6H6	103 aa		10.64	□□□□□ -0.71
HDAC4-216	ENST00000544989	SPG11	Q96JI7	2443 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989		A0A1W2PNV4	684 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	FAM234B	A2RU67	622 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	TMEM247	A6NEH6	219 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	KDM4E	B2RXH2	506 aa	Predicted RBP	10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	EIF1AY	O14602	144 aa	Known RBP	10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	ZNF195	O14628	629 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	MSTN	O14793	375 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	ADAMDEC1	O15204	470 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	GMFG	O60234	142 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	ANP32D	O95626	131 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	LINGO3	P0C6S8	592 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	PGC	P20142	388 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	FKBP2	P26885	142 aa	Known RBP	10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	IL12A	P29459	219 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	POLR2J	P52435	117 aa	Known RBP	10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	SUCLG1	P53597	346 aa	Known RBP	10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	CLDN15	P56746	228 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	PON3	Q15166	354 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	GPR68	Q15743	365 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	PDZK1	Q5T2W1	519 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	TNFAIP8L2	Q6P589	184 aa	Predicted RBP	10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	CMIP	Q8IY22	773 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	ZNF619	Q8N2I2	560 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	TMCO5A	Q8N6Q1	288 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	OR5M1	Q8NGP8	315 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	GPR119	Q8TDV5	335 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	TMEM234	Q8WY98	164 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	ST8SIA1	Q92185	356 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	SMPDL3B	Q92485	455 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	ROPN1L	Q96C74	230 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	REXO5	Q96IC2	774 aa	Known RBP	10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	RNF145	Q96MT1	663 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	SIKE1	Q9BRV8	207 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	SLC39A3	Q9BRY0	314 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	RBM24	Q9BX46	236 aa	Known RBP	10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	PRRG4	Q9BZD6	226 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	RAD21L1	Q9H4I0	556 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	SERHL2	Q9H4I8	314 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	RNF122	Q9H9V4	155 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	CALML5	Q9NZT1	146 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	MKLN1	Q9UL63	735 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	EDAR	Q9UNE0	448 aa		10.63	□□□□□ -0.71
HDAC4-216	ENST00000544989	UQCRHL	A0A096LP55	91 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	TUBAL3	A6NHL2	446 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	ETV2	O00321	342 aa	Predicted RBP	10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	HMGN4	O00479	90 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	UGT2B17	O75795	530 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	TGM6	O95932	706 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	CSTA	P01040	98 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	PSMA4	P25789	261 aa	Known RBP	10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	EIF1AX	P47813	144 aa	Known RBP	10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	SLC6A8	P48029	635 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	CCR4	P51679	360 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	DLX5	P56178	289 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	CLDN20	P56880	219 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	SELENBP1	Q13228	472 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	ZSWIM7	Q19AV6	140 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	GPAT3	Q53EU6	434 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	SLC25A53	Q5H9E4	307 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	LRRC74B	Q6ZQY2	392 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	MAVS	Q7Z434	540 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	GGN	Q86UU5	652 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	RNF130	Q86XS8	419 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	GCNT2	Q8N0V5	402 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	LILRA2	Q8N149	483 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	CLEC4F	Q8N1N0	589 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	OR2V1	Q8NHB1	315 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	CPNE4	Q96A23	557 aa	Predicted RBP	10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	GMPPA	Q96IJ6	420 aa	Predicted RBP	10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	ZNF845	Q96IR2	970 aa	Predicted RBP	10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	MAGEB18	Q96M61	343 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	KLHL15	Q96M94	604 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	OR52B2	Q96RD2	323 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	RABEP2	Q9H5N1	569 aa		10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	MTHFD2L	Q9H903	347 aa	Predicted RBP	10.62	□□□□□ -0.71
HDAC4-216	ENST00000544989	CACYBP	Q9HB71	228 aa	Known RBP	10.62	□□□□□ -0.71

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