RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 ZNF273Q14593 569 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 PCOLCEQ15113 449 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 TBR1Q16650 682 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 PLA1AQ53H76 456 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 IL23RQ5VWK5 629 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 ETFRF1Q6IPR1 90 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 SLC48A1Q6P1K1 146 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 PAPD4Q6PIY7 484 aaKnown RBP4.72□□□□□ -1.65
CLIP1-217ENST00000543205 CLEC2AQ6UVW9 174 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 KCTD9Q7L273 389 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 SPATA19Q7Z5L4 167 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 LRRC34Q8IZ02 419 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 MMP21Q8N119 569 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 LIX1Q8N485 282 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 DNAJB14Q8TBM8 379 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 UCN3Q969E3 161 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 GFM2Q969S9 779 aaKnown RBP4.72□□□□□ -1.65
CLIP1-217ENST00000543205 KLHL29Q96CT2 875 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 MESP1Q9BRJ9 268 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 PELOQ9BRX2 385 aaKnown RBP4.72□□□□□ -1.65
CLIP1-217ENST00000543205 DENND2DQ9H6A0 471 aaPredicted RBP4.72□□□□□ -1.65
CLIP1-217ENST00000543205 MYNNQ9NPC7 610 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 ADAP2Q9NPF8 381 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 MIEF1Q9NQG6 463 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 HEY2Q9UBP5 337 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 BAIAP2L1Q9UHR4 511 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 UTS2RQ9UKP6 389 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 PPIEQ9UNP9 301 aaKnown RBP4.72□□□□□ -1.65
CLIP1-217ENST00000543205 ZNF780BQ9Y6R6 833 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 FER1L5A0AVI2 2057 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 A0A1W2PQ72 361 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 A6NL46 340 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 WASHC1A8K0Z3 465 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 C17orf105B2RV13 164 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 SDHDO14521 159 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 EDF1O60869 148 aaKnown RBP4.71□□□□□ -1.66
CLIP1-217ENST00000543205 LRATO95237 230 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 SLC35E2P0CK97 266 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 G6PDP11413 515 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 BCKDHAP12694 445 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 DDX5P17844 614 aaKnown RBP4.71□□□□□ -1.66
CLIP1-217ENST00000543205 SDC1P18827 310 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 CSNK2A2P19784 350 aaPredicted RBP4.71□□□□□ -1.66
CLIP1-217ENST00000543205 EPHA3P29320 983 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 HPCAL1P37235 193 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 RPL3P39023 403 aaKnown RBP4.71□□□□□ -1.66
CLIP1-217ENST00000543205 PGDP52209 483 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 CAPZA1P52907 286 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 AQP5P55064 265 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 SRSF3P84103 164 aaKnown RBP4.71□□□□□ -1.66
CLIP1-217ENST00000543205 ELAVL1Q15717 326 aaKnown RBP4.71□□□□□ -1.66
CLIP1-217ENST00000543205 EXT1Q16394 746 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 COLEC12Q5KU26 742 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 LCE4AQ5TA78 99 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 C6orf163Q5TEZ5 329 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 VWA5B1Q5TIE3 1220 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 SHEQ5VZ18 495 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 FAM71E1Q6IPT2 247 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 CDC73Q6P1J9 531 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 EPGNQ6UW88 154 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 LARP4Q71RC2 724 aaKnown RBP eCLIP4.71□□□□□ -1.66
CLIP1-217ENST00000543205 TICAM1Q8IUC6 712 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 APLFQ8IW19 511 aaPredicted RBP4.71□□□□□ -1.66
CLIP1-217ENST00000543205 KBTBD2Q8IY47 623 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 ST13P4Q8IZP2 240 aaPredicted RBP4.71□□□□□ -1.66
CLIP1-217ENST00000543205 GALNT16Q8N428 558 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 OR14A16Q8NHC5 309 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 CLHC1Q8NHS4 586 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 M1APQ8TC57 530 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 WDR60Q8WVS4 1066 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 DAZLQ92904 295 aaKnown RBP4.71□□□□□ -1.66
CLIP1-217ENST00000543205 EXTL1Q92935 676 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 RIT1Q92963 219 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 EXOSC8Q96B26 276 aaKnown RBP4.71□□□□□ -1.66
CLIP1-217ENST00000543205 PPWD1Q96BP3 646 aaKnown RBP4.71□□□□□ -1.66
CLIP1-217ENST00000543205 RNFT2Q96EX2 444 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 THOC3Q96J01 351 aaKnown RBP4.71□□□□□ -1.66
CLIP1-217ENST00000543205 FCRL1Q96LA6 429 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 KLHL15Q96M94 604 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 TSSK3Q96PN8 268 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 BBS4Q96RK4 519 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 KRTAP9-8Q9BYQ0 159 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 REEP4Q9H6H4 257 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 WDR55Q9H6Y2 383 aaPredicted RBP4.71□□□□□ -1.66
CLIP1-217ENST00000543205 YY1AP1Q9H869 796 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 FBXO34Q9NWN3 711 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 EHD3Q9NZN3 535 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 ENTPD4Q9Y227 616 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 LIPGQ9Y5X9 500 aa4.71□□□□□ -1.66
CLIP1-217ENST00000543205 GAGE10A6NGK3 116 aa4.7□□□□□ -1.66
CLIP1-217ENST00000543205 AGAP5A6NIR3 686 aa4.7□□□□□ -1.66
CLIP1-217ENST00000543205 SAGE2PA6NJ88 616 aa4.7□□□□□ -1.66
CLIP1-217ENST00000543205 MKRN2OSH3BPM6 223 aa4.7□□□□□ -1.66
CLIP1-217ENST00000543205 HRKO00198 91 aa4.7□□□□□ -1.66
CLIP1-217ENST00000543205 ZNF195O14628 629 aa4.7□□□□□ -1.66
CLIP1-217ENST00000543205 UBDO15205 165 aa4.7□□□□□ -1.66
CLIP1-217ENST00000543205 POLR3GO15318 223 aaPredicted RBP4.7□□□□□ -1.66
CLIP1-217ENST00000543205 SERPINA7P05543 415 aa4.7□□□□□ -1.66
CLIP1-217ENST00000543205 TROVE2P10155 538 aaKnown RBP eCLIP4.7□□□□□ -1.66
CLIP1-217ENST00000543205 CPMP14384 443 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms