RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 FADS6Q8N9I5 356 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 OR7G3Q8NG95 312 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 OR4N2Q8NGD1 307 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 OR2V1Q8NHB1 315 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 FAM110BQ8TC76 370 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 EXT2Q93063 718 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 C1GALT1C1Q96EU7 318 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 NPAS1Q99742 590 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 FAM167BQ9BTA0 163 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 CD244Q9BZW8 370 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 RAB1BQ9H0U4 201 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 ZBTB26Q9HCK0 441 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 MYOZ1Q9NP98 299 aaPredicted RBP4.17□□□□□ -1.74
LIMS1-214ENST00000542845 PFDN4Q9NQP4 134 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 PAQR5Q9NXK6 330 aaPredicted RBP4.17□□□□□ -1.74
LIMS1-214ENST00000542845 TREM2Q9NZC2 230 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 GPRC5BQ9NZH0 403 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 PDP1Q9P0J1 537 aaPredicted RBP4.17□□□□□ -1.74
LIMS1-214ENST00000542845 MOKQ9UQ07 419 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 VWA7Q9Y334 891 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 OR10H1Q9Y4A9 318 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 OARD1Q9Y530 152 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 KMT2CQ8NEZ4 4911 aaKnown RBP4.17□□□□□ -1.74
LIMS1-214ENST00000542845 ARFGEF3Q5TH69 2177 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 OR5H1A6NKK0 313 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 C22orf46C9J442 243 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 ATP6V1G2-DDX39BF2Z307 99 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 ZNF561-AS1K7EIQ3 104 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 M0QZ24 198 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 STK16O75716 305 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 SCELO95171 688 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 TTC4O95801 387 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 TPM3P06753 285 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 YES1P07947 543 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 ERCC1P07992 297 aaPredicted RBP4.16□□□□□ -1.74
LIMS1-214ENST00000542845 MSMBP08118 114 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 CCDC175P0C221 793 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 PGCP20142 388 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 MDKP21741 143 aaPredicted RBP4.16□□□□□ -1.74
LIMS1-214ENST00000542845 IGHV1-2P23083 117 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 EDNRAP25101 427 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 PTX3P26022 381 aaPredicted RBP4.16□□□□□ -1.74
LIMS1-214ENST00000542845 EVI2BP34910 448 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 BSGP35613 385 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 CASP2P42575 452 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 ALDH9A1P49189 494 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 EMDP50402 254 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 PNLIPRP2P54317 469 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 RAB10P61026 200 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 IL13RA1P78552 427 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 RASGEF1BQ0VAM2 473 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 MGAT2Q10469 447 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 GANABQ14697 944 aaKnown RBP4.16□□□□□ -1.74
LIMS1-214ENST00000542845 RNPS1Q15287 305 aaKnown RBP4.16□□□□□ -1.74
LIMS1-214ENST00000542845 C9orf135Q5VTT2 229 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 ANKRD22Q5VYY1 191 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 FAM45BPQ6NSW5 357 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 C4orf22Q6V702 233 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 C17orf107Q6ZR85 190 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 FCRLAQ7L513 359 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 THAP5Q7Z6K1 395 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 P2RY8Q86VZ1 359 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 CMIPQ8IY22 773 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 LILRA2Q8N149 483 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 MIER2Q8N344 545 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 ZCCHC7Q8N3Z6 543 aaKnown RBP4.16□□□□□ -1.74
LIMS1-214ENST00000542845 NKAPQ8N5F7 415 aaKnown RBP4.16□□□□□ -1.74
LIMS1-214ENST00000542845 SIGLECL1Q8N7X8 197 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 HUS1BQ8NHY5 278 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 FAM110DQ8TAY7 271 aaPredicted RBP4.16□□□□□ -1.74
LIMS1-214ENST00000542845 FAM45AQ8TCE6 357 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 WDR60Q8WVS4 1066 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 UBE2E3Q969T4 207 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 SLC35A4Q96G79 324 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 RNF145Q96MT1 663 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 TMEM79Q9BSE2 394 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 TBL1XR1Q9BZK7 514 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 RTN4RQ9BZR6 473 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 QRSL1Q9H0R6 528 aaKnown RBP4.16□□□□□ -1.74
LIMS1-214ENST00000542845 CNOT10Q9H9A5 744 aaKnown RBP4.16□□□□□ -1.74
LIMS1-214ENST00000542845 SMURF1Q9HCE7 757 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 TIGARQ9NQ88 270 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 ERVK13-1Q9NX77 482 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 MAT2BQ9NZL9 334 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 CD274Q9NZQ7 290 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 FLRT3Q9NZU0 649 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 NTMQ9P121 344 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 KLHL13Q9P2N7 655 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 PRODH2Q9UF12 536 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 ZDHHC2Q9UIJ5 367 aa4.16□□□□□ -1.74
LIMS1-214ENST00000542845 CORO1CQ9ULV4 474 aaPredicted RBP4.16□□□□□ -1.74
LIMS1-214ENST00000542845 A0A0A6YYD5 115 aa4.15□□□□□ -1.75
LIMS1-214ENST00000542845 GOLGA6L10A6NI86 522 aa4.15□□□□□ -1.75
LIMS1-214ENST00000542845 MIF4GDA9UHW6 222 aaKnown RBP4.15□□□□□ -1.75
LIMS1-214ENST00000542845 AKR1B15C9JRZ8 316 aaPredicted RBP4.15□□□□□ -1.75
LIMS1-214ENST00000542845 SCAMP2O15127 329 aaKnown RBP4.15□□□□□ -1.75
LIMS1-214ENST00000542845 TO15178 435 aa4.15□□□□□ -1.75
LIMS1-214ENST00000542845 FADS1O60427 444 aa4.15□□□□□ -1.75
LIMS1-214ENST00000542845 MFAP3LO75121 409 aa4.15□□□□□ -1.75
LIMS1-214ENST00000542845 APOL3O95236 402 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms