RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 VAPAQ9P0L0 249 aa8.33□□□□□ -1.08
SNHG1-215ENST00000540904 STOML1Q9UBI4 398 aa8.33□□□□□ -1.08
SNHG1-215ENST00000540904 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.33□□□□□ -1.08
SNHG1-215ENST00000540904 HECTD1Q9ULT8 2610 aa8.33□□□□□ -1.08
SNHG1-215ENST00000540904 AP4B1Q9Y6B7 739 aa8.33□□□□□ -1.08
SNHG1-215ENST00000540904 GTF3C1Q12789 2109 aa8.33□□□□□ -1.08
SNHG1-215ENST00000540904 NUP214P35658 2090 aaPredicted RBP8.33□□□□□ -1.08
SNHG1-215ENST00000540904 DOPEY1Q5JWR5 2465 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 USP9YO00507 2555 aaPredicted RBP8.32□□□□□ -1.08
SNHG1-215ENST00000540904 FLNBO75369 2602 aaKnown RBP8.32□□□□□ -1.08
SNHG1-215ENST00000540904 C7orf72A4D263 438 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 MBD3L4A6NDZ8 208 aaPredicted RBP8.32□□□□□ -1.08
SNHG1-215ENST00000540904 MBD3L3A6NE82 208 aaPredicted RBP8.32□□□□□ -1.08
SNHG1-215ENST00000540904 TMEM247A6NEH6 219 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 AGAP5A6NIR3 686 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 MBD3L5A6NJ08 208 aaPredicted RBP8.32□□□□□ -1.08
SNHG1-215ENST00000540904 C19orf84I3L1E1 186 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 ANGPT2O15123 496 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 BCAS1O75363 584 aaPredicted RBP8.32□□□□□ -1.08
SNHG1-215ENST00000540904 SNRPB2P08579 225 aaKnown RBP8.32□□□□□ -1.08
SNHG1-215ENST00000540904 TFPTP0C1Z6 253 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 HOXB9P17482 250 aaPredicted RBP8.32□□□□□ -1.08
SNHG1-215ENST00000540904 BMP5P22003 454 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 ME2P23368 584 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 CEACAM8P31997 349 aaPredicted RBP8.32□□□□□ -1.08
SNHG1-215ENST00000540904 PGM1P36871 562 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 EIF1P41567 113 aaKnown RBP8.32□□□□□ -1.08
SNHG1-215ENST00000540904 AGFG1P52594 562 aaKnown RBP8.32□□□□□ -1.08
SNHG1-215ENST00000540904 SUCLG1P53597 346 aaKnown RBP8.32□□□□□ -1.08
SNHG1-215ENST00000540904 CRISP3P54108 245 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 CLDN15P56746 228 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 EEFSECP57772 596 aaKnown RBP8.32□□□□□ -1.08
SNHG1-215ENST00000540904 KCNJ10P78508 379 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 SKP2Q13309 424 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 CBFBQ13951 182 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 FGFBP1Q14512 234 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 RGNQ15493 299 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 RPS26P11Q5JNZ5 115 aaPredicted RBP8.32□□□□□ -1.08
SNHG1-215ENST00000540904 AP1ARQ63HQ0 302 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 MSRB3Q8IXL7 192 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 C9orf106Q8NAJ2 232 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 NAXEQ8NCW5 288 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 MBD3L2Q8NHZ7 208 aaPredicted RBP8.32□□□□□ -1.08
SNHG1-215ENST00000540904 FBXO27Q8NI29 283 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 POC1BQ8TC44 478 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 GPR119Q8TDV5 335 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 SLC38A5Q8WUX1 472 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 OIT3Q8WWZ8 545 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 WNT2BQ93097 391 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 MAL2Q969L2 176 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 ZNF317Q96PQ6 595 aaPredicted RBP8.32□□□□□ -1.08
SNHG1-215ENST00000540904 THUMPD3Q9BV44 507 aaKnown RBP8.32□□□□□ -1.08
SNHG1-215ENST00000540904 LAT2Q9GZY6 243 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 RAD21L1Q9H4I0 556 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 MTHFD2LQ9H903 347 aaPredicted RBP8.32□□□□□ -1.08
SNHG1-215ENST00000540904 KCNJ16Q9NPI9 418 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.32□□□□□ -1.08
SNHG1-215ENST00000540904 THUMPD1Q9NXG2 353 aaKnown RBP8.32□□□□□ -1.08
SNHG1-215ENST00000540904 CALML5Q9NZT1 146 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 KLHL14Q9P2G3 628 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 CLCF1Q9UBD9 225 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 LEF1Q9UJU2 399 aaPredicted RBP8.32□□□□□ -1.08
SNHG1-215ENST00000540904 SLC35A3Q9Y2D2 325 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 NDUFAF1Q9Y375 327 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 ICE1Q9Y2F5 2266 aa8.32□□□□□ -1.08
SNHG1-215ENST00000540904 SLC22A20A6NK97 555 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 DYNC1I1O14576 645 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 EIF1AYO14602 144 aaKnown RBP8.31□□□□□ -1.08
SNHG1-215ENST00000540904 TNFSF11O14788 317 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 TGM6O95932 706 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 TMIGD3P0DMS9 266 aaPredicted RBP8.31□□□□□ -1.08
SNHG1-215ENST00000540904 NID1P14543 1247 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 IL7RP16871 459 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 PRKCAP17252 672 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 PGCP20142 388 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 IL11P20809 199 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 PPIBP23284 216 aaKnown RBP8.31□□□□□ -1.08
SNHG1-215ENST00000540904 PSMA4P25789 261 aaKnown RBP8.31□□□□□ -1.08
SNHG1-215ENST00000540904 RYKP34925 604 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 SFTPDP35247 375 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 EIF1AXP47813 144 aaKnown RBP8.31□□□□□ -1.08
SNHG1-215ENST00000540904 ZNF136P52737 540 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 RPS3AP61247 264 aaKnown RBP8.31□□□□□ -1.08
SNHG1-215ENST00000540904 RAC1P63000 192 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 FADDQ13158 208 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 NFYCQ13952 458 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 GNA13Q14344 377 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 PON3Q15166 354 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 QPRTQ15274 297 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 MAPK11Q15759 364 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 SGCBQ16585 318 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 PPP4R4Q6NUP7 873 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 DLEU7Q6UYE1 221 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 P4HA3Q7Z4N8 544 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 ADGRE4PQ86SQ3 457 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 DHDDSQ86SQ9 333 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 GGNQ86UU5 652 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 RETREG3Q86VR2 466 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 PEX5LQ8IYB4 626 aa8.31□□□□□ -1.08
SNHG1-215ENST00000540904 GCNT2Q8N0V5 402 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 118 ms