RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	SEMA6A	Q9H2E6	1030 aa		5.19	□□□□□ -1.58
CD44-231	ENST00000531110	REEP4	Q9H6H4	257 aa		5.19	□□□□□ -1.58
CD44-231	ENST00000531110	NT5DC2	Q9H857	520 aa		5.19	□□□□□ -1.58
CD44-231	ENST00000531110	MYNN	Q9NPC7	610 aa		5.19	□□□□□ -1.58
CD44-231	ENST00000531110	PLSCR3	Q9NRY6	295 aa		5.19	□□□□□ -1.58
CD44-231	ENST00000531110	ACSS1	Q9NUB1	689 aa	Predicted RBP	5.19	□□□□□ -1.58
CD44-231	ENST00000531110	DECR2	Q9NUI1	292 aa		5.19	□□□□□ -1.58
CD44-231	ENST00000531110	NLGN3	Q9NZ94	848 aa		5.19	□□□□□ -1.58
CD44-231	ENST00000531110	SPG21	Q9NZD8	308 aa		5.19	□□□□□ -1.58
CD44-231	ENST00000531110	GRHL1	Q9NZI5	618 aa		5.19	□□□□□ -1.58
CD44-231	ENST00000531110	CALML5	Q9NZT1	146 aa		5.19	□□□□□ -1.58
CD44-231	ENST00000531110	MSRB1	Q9NZV6	116 aa		5.19	□□□□□ -1.58
CD44-231	ENST00000531110	PISD	Q9UG56	409 aa		5.19	□□□□□ -1.58
CD44-231	ENST00000531110	SLC25A13	Q9UJS0	675 aa		5.19	□□□□□ -1.58
CD44-231	ENST00000531110	OSGIN1	Q9UJX0	560 aa		5.19	□□□□□ -1.58
CD44-231	ENST00000531110	FEM1B	Q9UK73	627 aa		5.19	□□□□□ -1.58
CD44-231	ENST00000531110	TBX20	Q9UMR3	447 aa		5.19	□□□□□ -1.58
CD44-231	ENST00000531110	RPH3AL	Q9UNE2	315 aa		5.19	□□□□□ -1.58
CD44-231	ENST00000531110	STUB1	Q9UNE7	303 aa		5.19	□□□□□ -1.58
CD44-231	ENST00000531110	RCE1	Q9Y256	329 aa		5.19	□□□□□ -1.58
CD44-231	ENST00000531110	FBXO7	Q9Y3I1	522 aa		5.19	□□□□□ -1.58
CD44-231	ENST00000531110	MMACHC	Q9Y4U1	282 aa		5.19	□□□□□ -1.58
CD44-231	ENST00000531110	KIAA1217	Q5T5P2	1943 aa		5.19	□□□□□ -1.58
CD44-231	ENST00000531110	TANC1	Q9C0D5	1861 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110		A0A0U1RQS6	177 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	TMEM218	A2RU14	115 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	BTBD17	A6NE02	478 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	ASB14	A6NK59	587 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	ZNF716	A6NP11	495 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	MAGEB17	A8MXT2	336 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	PROB1	E7EW31	1015 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	ZNF263	O14978	683 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	LDLRAD4	O15165	306 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	EIF3D	O15371	548 aa	Known RBP eCLIP	5.18	□□□□□ -1.58
CD44-231	ENST00000531110	COCH	O43405	550 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	NEURL1	O76050	574 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	MOCS3	O95396	460 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	METTL18	O95568	372 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	NFATC1	O95644	943 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	GSR	P00390	522 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	MELTF	P08582	738 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	ZNF735	P0CB33	412 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	PEPD	P12955	493 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	UQCRC2	P22695	453 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	ME2	P23368	584 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	ITGA3	P26006	1051 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	SLC6A1	P30531	599 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	GPR4	P46093	362 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	CCT4	P50991	539 aa	Known RBP	5.18	□□□□□ -1.58
CD44-231	ENST00000531110	RAB5C	P51148	216 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	XK	P51811	444 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	AQP5	P55064	265 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	DYNLL1	P63167	89 aa	Known RBP	5.18	□□□□□ -1.58
CD44-231	ENST00000531110	SP3	Q02447	781 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	CSTF1	Q05048	431 aa	Known RBP	5.18	□□□□□ -1.58
CD44-231	ENST00000531110	MBTD1	Q05BQ5	628 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	RASGEF1B	Q0VAM2	473 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	LCP2	Q13094	533 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	PNOC	Q13519	176 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	FASTK	Q14296	549 aa	Known RBP	5.18	□□□□□ -1.58
CD44-231	ENST00000531110	INPP5J	Q15735	1006 aa	Predicted RBP	5.18	□□□□□ -1.58
CD44-231	ENST00000531110	ZNF630	Q2M218	657 aa	Predicted RBP	5.18	□□□□□ -1.58
CD44-231	ENST00000531110	HNRNPA1L2	Q32P51	320 aa	Known RBP	5.18	□□□□□ -1.58
CD44-231	ENST00000531110	ZNF404	Q494X3	552 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	SBK1	Q52WX2	424 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	SGO1	Q5FBB7	561 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	DCAF10	Q5QP82	559 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	ZDHHC20	Q5W0Z9	365 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	FBXW9	Q5XUX1	488 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	WSCD1	Q658N2	575 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	ULK3	Q6PHR2	472 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	TRIL	Q7L0X0	811 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	SYT13	Q7L8C5	426 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	CHST3	Q7LGC8	479 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	CEP97	Q8IW35	865 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	CPNE9	Q8IYJ1	553 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	ZNF679	Q8IYX0	411 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	GPC2	Q8N158	579 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	ZNF786	Q8N393	782 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	RTL3	Q8N8U3	475 aa	Known RBP	5.18	□□□□□ -1.58
CD44-231	ENST00000531110	HSD17B11	Q8NBQ5	300 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	UXS1	Q8NBZ7	420 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	FAM83F	Q8NEG4	500 aa	Predicted RBP	5.18	□□□□□ -1.58
CD44-231	ENST00000531110	BPIFC	Q8NFQ6	507 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	OR52J3	Q8NH60	311 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	WDR36	Q8NI36	951 aa	Known RBP	5.18	□□□□□ -1.58
CD44-231	ENST00000531110	FAM110D	Q8TAY7	271 aa	Predicted RBP	5.18	□□□□□ -1.58
CD44-231	ENST00000531110	SELENOM	Q8WWX9	145 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	TM9SF4	Q92544	642 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	OSTF1	Q92882	214 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	FAM162A	Q96A26	154 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	NXNL1	Q96CM4	212 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	MSI2	Q96DH6	328 aa	Known RBP	5.18	□□□□□ -1.58
CD44-231	ENST00000531110	PDLIM5	Q96HC4	596 aa	Known RBP	5.18	□□□□□ -1.58
CD44-231	ENST00000531110	NARS2	Q96I59	477 aa	Known RBP	5.18	□□□□□ -1.58
CD44-231	ENST00000531110	ZNF479	Q96JC4	524 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	ZNF354B	Q96LW1	612 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	OR52B2	Q96RD2	323 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	AGPAT1	Q99943	283 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	NDUFAF3	Q9BU61	184 aa		5.18	□□□□□ -1.58

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