RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 COPZ1P61923 177 aa19.26■□□□□ 0.67
VPS28-208ENST00000527797 PGBD2Q6P3X8 592 aa19.26■□□□□ 0.67
VPS28-208ENST00000527797 APLFQ8IW19 511 aaPredicted RBP19.26■□□□□ 0.67
VPS28-208ENST00000527797 TMCO5AQ8N6Q1 288 aa19.26■□□□□ 0.67
VPS28-208ENST00000527797 RNF217Q8TC41 542 aa19.26■□□□□ 0.67
VPS28-208ENST00000527797 GTPBP3Q969Y2 492 aaKnown RBP19.26■□□□□ 0.67
VPS28-208ENST00000527797 NR1H4Q96RI1 486 aaPredicted RBP19.26■□□□□ 0.67
VPS28-208ENST00000527797 NODALQ96S42 347 aa19.26■□□□□ 0.67
VPS28-208ENST00000527797 GPN2Q9H9Y4 310 aaPredicted RBP19.26■□□□□ 0.67
VPS28-208ENST00000527797 IL17BQ9UHF5 180 aa19.26■□□□□ 0.67
VPS28-208ENST00000527797 YARS2Q9Y2Z4 477 aaKnown RBP19.26■□□□□ 0.67
VPS28-208ENST00000527797 A0A0B4J2E0 115 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 A0A1B0GWA3 101 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 A0A1B0GX12 115 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 SCO2O43819 266 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 ITGA10O75578 1167 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 DXOO77932 396 aaKnown RBP19.25■□□□□ 0.67
VPS28-208ENST00000527797 LINGO3P0C6S8 592 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 ITGAMP11215 1152 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 UGT2B15P54855 530 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 RSPO4Q2I0M5 234 aaPredicted RBP19.25■□□□□ 0.67
VPS28-208ENST00000527797 RPS19BP1Q86WX3 136 aaKnown RBP19.25■□□□□ 0.67
VPS28-208ENST00000527797 CADM2Q8N3J6 435 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 ARSGQ96EG1 525 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 IP6K3Q96PC2 410 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 DGCR6LQ9BY27 220 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 RTN4RQ9BZR6 473 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 CDCP1Q9H5V8 836 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 RYDENQ9NUL5 291 aaKnown RBP19.25■□□□□ 0.67
VPS28-208ENST00000527797 ENOPH1Q9UHY7 261 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 KNTC1P50748 2209 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 MASP2O00187 686 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 SLC16A6O15403 523 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 OIP5O43482 229 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 LYPD3O95274 346 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 SERPINA7P05543 415 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 GNAO1P09471 354 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 MYF6P23409 242 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 POLR2IP36954 125 aaKnown RBP19.25■□□□□ 0.67
VPS28-208ENST00000527797 CCR4P51679 360 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 NPRL3Q12980 569 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 KRT80Q6KB66 452 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 OPN5Q6U736 354 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 CBLN3Q6UW01 205 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 USP51Q70EK9 711 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 MISPQ8IVT2 679 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 ADAMTS17Q8TE56 1095 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 GRHL3Q8TE85 626 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 TMEM255BQ8WV15 326 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 SPACA9Q96E40 222 aaPredicted RBP19.25■□□□□ 0.67
VPS28-208ENST00000527797 PRSS27Q9BQR3 290 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 GABARAPL3Q9BY60 117 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 UCK2Q9BZX2 261 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 UBAP1Q9NZ09 502 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 SELENONQ9NZV5 590 aa19.25■□□□□ 0.67
VPS28-208ENST00000527797 LOC100130705A0A1B0GUX0 176 aa19.24■□□□□ 0.67
VPS28-208ENST00000527797 HCRTR2O43614 444 aa19.24■□□□□ 0.67
VPS28-208ENST00000527797 CLIC3O95833 236 aa19.24■□□□□ 0.67
VPS28-208ENST00000527797 LIPCP11150 499 aa19.24■□□□□ 0.67
VPS28-208ENST00000527797 SLC6A8P48029 635 aa19.24■□□□□ 0.67
VPS28-208ENST00000527797 MLF1P58340 268 aa19.24■□□□□ 0.67
VPS28-208ENST00000527797 ZNF117Q03924 483 aa19.24■□□□□ 0.67
VPS28-208ENST00000527797 Q0VFX4 171 aa19.24■□□□□ 0.67
VPS28-208ENST00000527797 CHAF1BQ13112 559 aa19.24■□□□□ 0.67
VPS28-208ENST00000527797 ATP1A4Q13733 1029 aa19.24■□□□□ 0.67
VPS28-208ENST00000527797 NTRK2Q16620 822 aa19.24■□□□□ 0.67
VPS28-208ENST00000527797 C1orf94Q6P1W5 598 aa19.24■□□□□ 0.67
VPS28-208ENST00000527797 ULK3Q6PHR2 472 aa19.24■□□□□ 0.67
VPS28-208ENST00000527797 MBOAT2Q6ZWT7 520 aa19.24■□□□□ 0.67
VPS28-208ENST00000527797 ZER1Q7Z7L7 766 aa19.24■□□□□ 0.67
VPS28-208ENST00000527797 ARMC10Q8N2F6 343 aa19.24■□□□□ 0.67
VPS28-208ENST00000527797 PARP8Q8N3A8 854 aa19.24■□□□□ 0.67
VPS28-208ENST00000527797 PIGXQ8TBF5 258 aa19.24■□□□□ 0.67
VPS28-208ENST00000527797 GRIP2Q9C0E4 1043 aa19.24■□□□□ 0.67
VPS28-208ENST00000527797 KRCC1Q9NPI7 259 aaPredicted RBP19.24■□□□□ 0.67
VPS28-208ENST00000527797 NINQ8N4C6 2090 aa19.23■□□□□ 0.67
VPS28-208ENST00000527797 CHP2O43745 196 aa19.23■□□□□ 0.67
VPS28-208ENST00000527797 SOX3P41225 446 aa19.23■□□□□ 0.67
VPS28-208ENST00000527797 SSR4P51571 173 aa19.23■□□□□ 0.67
VPS28-208ENST00000527797 TGIF1Q15583 401 aa19.23■□□□□ 0.67
VPS28-208ENST00000527797 ZNF791Q3KP31 576 aaPredicted RBP19.23■□□□□ 0.67
VPS28-208ENST00000527797 ALG10BQ5I7T1 473 aa19.23■□□□□ 0.67
VPS28-208ENST00000527797 FCRLBQ6BAA4 426 aa19.23■□□□□ 0.67
VPS28-208ENST00000527797 KLHL17Q6TDP4 642 aa19.23■□□□□ 0.67
VPS28-208ENST00000527797 PRICKLE2Q7Z3G6 844 aa19.23■□□□□ 0.67
VPS28-208ENST00000527797 RNF113BQ8IZP6 322 aaKnown RBP19.23■□□□□ 0.67
VPS28-208ENST00000527797 GNPDA2Q8TDQ7 276 aa19.23■□□□□ 0.67
VPS28-208ENST00000527797 DNAJA4Q8WW22 397 aaPredicted RBP19.23■□□□□ 0.67
VPS28-208ENST00000527797 ASB15Q8WXK1 588 aa19.23■□□□□ 0.67
VPS28-208ENST00000527797 SH3YL1Q96HL8 342 aaPredicted RBP19.23■□□□□ 0.67
VPS28-208ENST00000527797 MPP4Q96JB8 637 aa19.23■□□□□ 0.67
VPS28-208ENST00000527797 HS6ST2Q96MM7 605 aa19.23■□□□□ 0.67
VPS28-208ENST00000527797 RIF1Q5UIP0 2472 aaKnown RBP19.23■□□□□ 0.67
VPS28-208ENST00000527797 TP53I11O14683 189 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 NTN1O95631 604 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 IDH2P48735 452 aaKnown RBP19.22■□□□□ 0.67
VPS28-208ENST00000527797 TPD52P55327 224 aaPredicted RBP19.22■□□□□ 0.67
VPS28-208ENST00000527797 LSM11P83369 360 aaKnown RBP eCLIP19.22■□□□□ 0.67
VPS28-208ENST00000527797 COX10Q12887 443 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 IL18R1Q13478 541 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms