RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 IL12AP29459 219 aa18.53■□□□□ 0.56
VPS28-206ENST00000526734 TPD52P55327 224 aaPredicted RBP18.53■□□□□ 0.56
VPS28-206ENST00000526734 FOXF1Q12946 379 aa18.53■□□□□ 0.56
VPS28-206ENST00000526734 CBFBQ13951 182 aa18.53■□□□□ 0.56
VPS28-206ENST00000526734 DAZAP2Q15038 168 aaPredicted RBP18.53■□□□□ 0.56
VPS28-206ENST00000526734 SLC9B1Q4ZJI4 515 aa18.53■□□□□ 0.56
VPS28-206ENST00000526734 PDZK1Q5T2W1 519 aa18.53■□□□□ 0.56
VPS28-206ENST00000526734 TNFAIP8L2Q6P589 184 aaPredicted RBP18.53■□□□□ 0.56
VPS28-206ENST00000526734 CBLN3Q6UW01 205 aa18.53■□□□□ 0.56
VPS28-206ENST00000526734 EIF3MQ7L2H7 374 aaKnown RBP18.53■□□□□ 0.56
VPS28-206ENST00000526734 LURAP1LQ8IV03 231 aa18.53■□□□□ 0.56
VPS28-206ENST00000526734 OR10D3Q8NH80 312 aa18.53■□□□□ 0.56
VPS28-206ENST00000526734 POC1BQ8TC44 478 aa18.53■□□□□ 0.56
VPS28-206ENST00000526734 PMM1Q92871 262 aa18.53■□□□□ 0.56
VPS28-206ENST00000526734 ROPN1LQ96C74 230 aa18.53■□□□□ 0.56
VPS28-206ENST00000526734 KLHL15Q96M94 604 aa18.53■□□□□ 0.56
VPS28-206ENST00000526734 PRRG4Q9BZD6 226 aa18.53■□□□□ 0.56
VPS28-206ENST00000526734 LAT2Q9GZY6 243 aa18.53■□□□□ 0.56
VPS28-206ENST00000526734 SAP130Q9H0E3 1048 aa18.53■□□□□ 0.56
VPS28-206ENST00000526734 RMND5AQ9H871 391 aa18.53■□□□□ 0.56
VPS28-206ENST00000526734 GLRX2Q9NS18 164 aa18.53■□□□□ 0.56
VPS28-206ENST00000526734 GALNT8Q9NY28 637 aa18.53■□□□□ 0.56
VPS28-206ENST00000526734 SLC35A3Q9Y2D2 325 aa18.53■□□□□ 0.56
VPS28-206ENST00000526734 ETV2O00321 342 aaPredicted RBP18.52■□□□□ 0.56
VPS28-206ENST00000526734 ZNF195O14628 629 aa18.52■□□□□ 0.56
VPS28-206ENST00000526734 DIAPH2O60879 1101 aa18.52■□□□□ 0.56
VPS28-206ENST00000526734 CTAG2O75638 210 aa18.52■□□□□ 0.56
VPS28-206ENST00000526734 KRT75O95678 551 aa18.52■□□□□ 0.56
VPS28-206ENST00000526734 CD8BP10966 210 aa18.52■□□□□ 0.56
VPS28-206ENST00000526734 KRTAP10-9P60411 292 aa18.52■□□□□ 0.56
VPS28-206ENST00000526734 CTU2Q2VPK5 515 aaKnown RBP18.52■□□□□ 0.56
VPS28-206ENST00000526734 SLC25A53Q5H9E4 307 aa18.52■□□□□ 0.56
VPS28-206ENST00000526734 PLXDC2Q6UX71 529 aa18.52■□□□□ 0.56
VPS28-206ENST00000526734 MAVSQ7Z434 540 aa18.52■□□□□ 0.56
VPS28-206ENST00000526734 LUZP2Q86TE4 346 aa18.52■□□□□ 0.56
VPS28-206ENST00000526734 TMCO5AQ8N6Q1 288 aa18.52■□□□□ 0.56
VPS28-206ENST00000526734 CNEP1R1Q8N9A8 125 aa18.52■□□□□ 0.56
VPS28-206ENST00000526734 GPR119Q8TDV5 335 aa18.52■□□□□ 0.56
VPS28-206ENST00000526734 ZNF845Q96IR2 970 aaPredicted RBP18.52■□□□□ 0.56
VPS28-206ENST00000526734 TIGARQ9NQ88 270 aa18.52■□□□□ 0.56
VPS28-206ENST00000526734 MKLN1Q9UL63 735 aa18.52■□□□□ 0.56
VPS28-206ENST00000526734 EMC9Q9Y3B6 208 aa18.52■□□□□ 0.56
VPS28-206ENST00000526734 FAM221AA4D161 298 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 A6NNC1 897 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 RFXANKO14593 260 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 FCMRO60667 390 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 DNAJA2O60884 412 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 UGT2B17O75795 530 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 CSTAP01040 98 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 PABPC4LP0CB38 370 aaKnown RBP18.51■□□□□ 0.55
VPS28-206ENST00000526734 ZCCHC18P0CG32 403 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 EPXP11678 715 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 PRKCAP17252 672 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 KIR2DL2P43627 348 aaPredicted RBP18.51■□□□□ 0.55
VPS28-206ENST00000526734 MRPL19P49406 292 aaKnown RBP18.51■□□□□ 0.55
VPS28-206ENST00000526734 IRX1P78414 480 aaPredicted RBP18.51■□□□□ 0.55
VPS28-206ENST00000526734 SELENBP1Q13228 472 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 SKP2Q13309 424 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 GUSBP1Q15486 140 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 TTMPQ5BVD1 217 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 HBMQ6B0K9 141 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 GTF2IRD2BQ6EKJ0 949 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 EPGNQ6UW88 154 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 ZNF621Q6ZSS3 439 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 FAM214BQ7L5A3 538 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 GTF2IRD2Q86UP8 949 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 LILRA2Q8N149 483 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 ZNF619Q8N2I2 560 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 MIER2Q8N344 545 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 FBXO27Q8NI29 283 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 DYDC1Q8WWB3 177 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 ST8SIA1Q92185 356 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 RAB8BQ92930 207 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 STARD4Q96DR4 205 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 GMPPAQ96IJ6 420 aaPredicted RBP18.51■□□□□ 0.55
VPS28-206ENST00000526734 DACH2Q96NX9 599 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 TRNT1Q96Q11 434 aaKnown RBP18.51■□□□□ 0.55
VPS28-206ENST00000526734 OR52B2Q96RD2 323 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 SLC39A3Q9BRY0 314 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 ELOVL5Q9NYP7 299 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 EDARQ9UNE0 448 aa18.51■□□□□ 0.55
VPS28-206ENST00000526734 NUP214P35658 2090 aaPredicted RBP18.51■□□□□ 0.55
VPS28-206ENST00000526734 POLR3GO15318 223 aaPredicted RBP18.5■□□□□ 0.55
VPS28-206ENST00000526734 OIP5O43482 229 aa18.5■□□□□ 0.55
VPS28-206ENST00000526734 CXCL13O43927 109 aa18.5■□□□□ 0.55
VPS28-206ENST00000526734 SMNDC1O75940 238 aaKnown RBP eCLIP18.5■□□□□ 0.55
VPS28-206ENST00000526734 NTN1O95631 604 aa18.5■□□□□ 0.55
VPS28-206ENST00000526734 H2AFXP16104 143 aaPredicted RBP18.5■□□□□ 0.55
VPS28-206ENST00000526734 PGCP20142 388 aa18.5■□□□□ 0.55
VPS28-206ENST00000526734 CCR4P51679 360 aa18.5■□□□□ 0.55
VPS28-206ENST00000526734 STX1BP61266 288 aa18.5■□□□□ 0.55
VPS28-206ENST00000526734 TYW3Q6IPR3 259 aaKnown RBP18.5■□□□□ 0.55
VPS28-206ENST00000526734 RNF130Q86XS8 419 aa18.5■□□□□ 0.55
VPS28-206ENST00000526734 CMIPQ8IY22 773 aa18.5■□□□□ 0.55
VPS28-206ENST00000526734 OR6K3Q8NGY3 331 aa18.5■□□□□ 0.55
VPS28-206ENST00000526734 TMEM234Q8WY98 164 aa18.5■□□□□ 0.55
VPS28-206ENST00000526734 CPNE4Q96A23 557 aaPredicted RBP18.5■□□□□ 0.55
VPS28-206ENST00000526734 ITCHQ96J02 903 aa18.5■□□□□ 0.55
VPS28-206ENST00000526734 NPAS1Q99742 590 aa18.5■□□□□ 0.55
VPS28-206ENST00000526734 POLDIP3Q9BY77 421 aaKnown RBP18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms