RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 CNOT2Q9NZN8 540 aaKnown RBP10.95□□□□□ -0.66
SYNPO-204ENST00000519664 CKAP5Q14008 2032 aa10.95□□□□□ -0.66
SYNPO-204ENST00000519664 LINC01553A4QN01 128 aa10.95□□□□□ -0.66
SYNPO-204ENST00000519664 POM121BA6NF01 834 aa10.95□□□□□ -0.66
SYNPO-204ENST00000519664 CASC3O15234 703 aaKnown RBP10.95□□□□□ -0.66
SYNPO-204ENST00000519664 PPM1BO75688 479 aa10.95□□□□□ -0.66
SYNPO-204ENST00000519664 F13BP05160 661 aa10.95□□□□□ -0.66
SYNPO-204ENST00000519664 MMP11P24347 488 aa10.95□□□□□ -0.66
SYNPO-204ENST00000519664 OR1D4P47884 311 aa10.95□□□□□ -0.66
SYNPO-204ENST00000519664 KCNJ10P78508 379 aa10.95□□□□□ -0.66
SYNPO-204ENST00000519664 MCEMP1Q8IX19 187 aa10.95□□□□□ -0.66
SYNPO-204ENST00000519664 ZNF683Q8IZ20 524 aa10.95□□□□□ -0.66
SYNPO-204ENST00000519664 DNAJC5GQ8N7S2 189 aa10.95□□□□□ -0.66
SYNPO-204ENST00000519664 ZNF615Q8N8J6 731 aa10.95□□□□□ -0.66
SYNPO-204ENST00000519664 ACER3Q9NUN7 267 aa10.95□□□□□ -0.66
SYNPO-204ENST00000519664 SPHK1Q9NYA1 384 aa10.95□□□□□ -0.66
SYNPO-204ENST00000519664 GSKIPQ9P0R6 139 aa10.95□□□□□ -0.66
SYNPO-204ENST00000519664 PADI2Q9Y2J8 665 aa10.95□□□□□ -0.66
SYNPO-204ENST00000519664 UGT2A1Q9Y4X1 527 aa10.95□□□□□ -0.66
SYNPO-204ENST00000519664 DCDC2BA2VCK2 349 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 METTL21EPA6NDL7 271 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 HMX3A6NHT5 357 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 SOCS6O14544 535 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 PRKYO43930 277 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 PRKNO60260 465 aaPredicted RBP10.94□□□□□ -0.66
SYNPO-204ENST00000519664 LCMT2O60294 686 aaKnown RBP10.94□□□□□ -0.66
SYNPO-204ENST00000519664 F3P13726 295 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 RAB40BQ12829 278 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 OR1Q1Q15612 314 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 SYT6Q5T7P8 510 aaPredicted RBP10.94□□□□□ -0.66
SYNPO-204ENST00000519664 GDPGP1Q6ZNW5 385 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 TMEM151BQ8IW70 566 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 ZNF639Q9UID6 485 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 VDAC3Q9Y277 283 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 TEX13CA0A0J9YWL9 993 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 OR2AT4A6NND4 320 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 HEXBP07686 556 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 CTSLP07711 333 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 H2AFB2P0C5Z0 115 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 ANXA3P12429 323 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 CPMP14384 443 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 BCL6P41182 706 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 MAGEA2P43356 314 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 EMP3P54852 163 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 CLDN12P56749 244 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 EFR3AQ14156 821 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 PGGHGQ32M88 737 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 LINC00299Q6ZSB3 139 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 DGLUCYQ7Z3D6 616 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 PTOV1Q86YD1 416 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 RIMKLAQ8IXN7 391 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 GDPD1Q8N9F7 314 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 OR2T35Q8NGX2 323 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 FKBP10Q96AY3 582 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 PDXPQ96GD0 296 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 RANBP3Q9H6Z4 567 aaPredicted RBP10.94□□□□□ -0.66
SYNPO-204ENST00000519664 CHMP1AQ9HD42 196 aaPredicted RBP10.94□□□□□ -0.66
SYNPO-204ENST00000519664 SPATA6Q9NWH7 488 aaPredicted RBP10.94□□□□□ -0.66
SYNPO-204ENST00000519664 KCNN3Q9UGI6 736 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 YARS2Q9Y2Z4 477 aaKnown RBP10.94□□□□□ -0.66
SYNPO-204ENST00000519664 CACNA1EQ15878 2313 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 C17orf105B2RV13 164 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 M0R233 179 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 MCCD1P59942 119 aaPredicted RBP10.94□□□□□ -0.66
SYNPO-204ENST00000519664 SGCAQ16586 387 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 SWI5Q1ZZU3 235 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 ATAD3CQ5T2N8 411 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 SIGIRRQ6IA17 410 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 RPL13AP3Q6NVV1 102 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 ZNF619Q8N2I2 560 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 COQ8AQ8NI60 647 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 TMEM255BQ8WV15 326 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 FAM3CQ92520 227 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 TRIM43Q96BQ3 446 aaPredicted RBP10.94□□□□□ -0.66
SYNPO-204ENST00000519664 NEURL3Q96EH8 262 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 NECTIN4Q96NY8 510 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 CD93Q9NPY3 652 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 FCMRO60667 390 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 MAPK3P27361 379 aaPredicted RBP10.94□□□□□ -0.66
SYNPO-204ENST00000519664 KCNJ5P48544 419 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 CDK10Q15131 360 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 CCDC58Q4VC31 144 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 DNM1P34Q6PK57 102 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 MCATQ8IVS2 390 aaKnown RBP10.94□□□□□ -0.66
SYNPO-204ENST00000519664 TMEM163Q8TC26 289 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 ADAMTS19Q8TE59 1207 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 DAZLQ92904 295 aaKnown RBP10.94□□□□□ -0.66
SYNPO-204ENST00000519664 WDR77Q9BQA1 342 aaPredicted RBP10.94□□□□□ -0.66
SYNPO-204ENST00000519664 ZNF559Q9BR84 538 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 CST11Q9H112 138 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 METTL8Q9H825 291 aaKnown RBP10.94□□□□□ -0.66
SYNPO-204ENST00000519664 MGAT4CQ9UBM8 478 aa10.94□□□□□ -0.66
SYNPO-204ENST00000519664 MBD1Q9UIS9 605 aaPredicted RBP10.94□□□□□ -0.66
SYNPO-204ENST00000519664 COL5A3P25940 1745 aaPredicted RBP10.93□□□□□ -0.66
SYNPO-204ENST00000519664 OR14I1A6ND48 311 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 GPR75O95800 540 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 FOSL1P15407 271 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 PDX1P52945 283 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 MAPK14Q16539 360 aa10.93□□□□□ -0.66
SYNPO-204ENST00000519664 KCTD18Q6PI47 426 aaPredicted RBP10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms