RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 GLT8D1Q68CQ7 371 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 ZNF770Q6IQ21 691 aaPredicted RBP11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 TSSK4Q6SA08 328 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 CEACAM19Q7Z692 300 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 TAC4Q86UU9 113 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 OR5AK3PQ8NH89 298 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 ISG20L2Q9H9L3 353 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 RNF122Q9H9V4 155 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 DSPPQ9NZW4 1301 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 PYCARD-AS1I3L0S3 204 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 M0QZ92 97 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 SYT5O00445 386 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 EIF4E2O60573 245 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 SCN2BO60939 215 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 TXNDC12O95881 172 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 MMP2P08253 660 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 UQCRC2P22695 453 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 CCND3P30281 292 aaPredicted RBP11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 RPL34P49207 117 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 RNF144AP50876 292 aaPredicted RBP11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 HMGA2P52926 109 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 LIM2P55344 173 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 LSM11P83369 360 aaKnown RBP eCLIP11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 FAM69AQ5T7M9 428 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 ZNF783Q6ZMS7 281 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 CLEC20AQ6ZU45 233 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 C15orf54Q8N8G6 183 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 OR5D16Q8NGK9 328 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 ARL11Q969Q4 196 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 AMDHD1Q96NU7 426 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 C2orf88Q9BSF0 95 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 DUSP26Q9BV47 211 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 MMACHCQ9Y4U1 282 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 WDR81Q562E7 1941 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 OR2AT4A6NND4 320 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 CLDN9O95484 217 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 TRBC1P01850 177 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 SNRNP70P08621 437 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 ADRB3P13945 408 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 RPA2P15927 270 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 PRPS1L1P21108 318 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 LIMS1P48059 325 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 CAP1Q01518 475 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 SRSF11Q05519 484 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 SBSNQ6UWP8 590 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 OR2AK2Q8NG84 335 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 ZNF559Q9BR84 538 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 SYT17Q9BSW7 474 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 TRIM62Q9BVG3 475 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 SEC11CQ9BY50 192 aa11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 ZNF230Q9UIE0 474 aaPredicted RBP11.24□□□□□ -0.61
LIMCH1-213ENST00000511496 A0A1W2PPH5 198 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 AGPAT2O15120 278 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 NME6O75414 186 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 ZNF25P17030 456 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 RCC1P18754 421 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 PSMA3P25788 255 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 CD96P40200 585 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 NDUFA6P56556 154 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 C21orf58P58505 322 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 AP1S1P61966 158 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 PTSQ03393 145 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 RPE65Q16518 533 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 CTSL3PQ5NE16 218 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 TAPT1Q6NXT6 567 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 ARMCX2Q7L311 632 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 RBM45Q8IUH3 476 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 GAL3ST3Q96A11 431 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 ATG4CQ96DT6 458 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 FCRL2Q96LA5 508 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 FCRL4Q96PJ5 515 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 GJD2Q9UKL4 321 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 IMPA2O14732 288 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 PRODHO43272 600 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 CHST10O43529 356 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 RNF13O43567 381 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 VSIG10L2P0DP72 767 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 CD53P19397 219 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 DGKGP49619 791 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 GAS1P54826 345 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 CDH11P55287 796 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 NAE1Q13564 534 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 TAF13Q15543 124 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 ODF4Q2M2E3 257 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 SCD5Q86SK9 330 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 FOXRED2Q8IWF2 684 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 OR4K1Q8NGD4 311 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 LINC01599Q8WXQ3 324 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 PSMG2Q969U7 264 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 KCTD12Q96CX2 325 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 HRH4Q9H3N8 390 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 FAM212BQ9NTI7 297 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 ASIC5Q9NY37 505 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 SIRT4Q9Y6E7 314 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 MT-ND4LP03901 98 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 EPHX1P07099 455 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 DCTDP32321 178 aa11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 NUTF2P61970 127 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-213ENST00000511496 TIGD5Q53EQ6 642 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms