RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 MTFMTQ96DP5 389 aaKnown RBP3.38□□□□□ -1.87
USP53-205ENST00000509769 FCRL2Q96LA5 508 aaPredicted RBP3.38□□□□□ -1.87
USP53-205ENST00000509769 TAAR9Q96RI9 348 aa3.38□□□□□ -1.87
USP53-205ENST00000509769 TEAD3Q99594 435 aa3.38□□□□□ -1.87
USP53-205ENST00000509769 CDX2Q99626 313 aaPredicted RBP3.38□□□□□ -1.87
USP53-205ENST00000509769 ULBP3Q9BZM4 244 aa3.38□□□□□ -1.87
USP53-205ENST00000509769 HOXD1Q9GZZ0 328 aa3.38□□□□□ -1.87
USP53-205ENST00000509769 POLMQ9NP87 494 aaPredicted RBP3.38□□□□□ -1.87
USP53-205ENST00000509769 DCP1AQ9NPI6 582 aaPredicted RBP3.38□□□□□ -1.87
USP53-205ENST00000509769 ASB6Q9NWX5 421 aa3.38□□□□□ -1.87
USP53-205ENST00000509769 ZDHHC2Q9UIJ5 367 aa3.38□□□□□ -1.87
USP53-205ENST00000509769 TRAPPC2LQ9UL33 140 aa3.38□□□□□ -1.87
USP53-205ENST00000509769 SPO11Q9Y5K1 396 aa3.38□□□□□ -1.87
USP53-205ENST00000509769 RGPD5Q99666 1765 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 A0A0B4J293 547 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 A0A1W2PQL4 384 aaPredicted RBP3.37□□□□□ -1.87
USP53-205ENST00000509769 FAM227AF5H4B4 570 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 CLDN34H7C241 214 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 CBX4O00257 560 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 RAMP2O60895 175 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 YIF1AO95070 293 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 C22orf31O95567 290 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 CLDN1O95832 211 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 CSF2P04141 144 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 AMY2AP04746 511 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 TFAP2AP05549 437 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 CCL5P13501 91 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 ZNF44P15621 663 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 AKR1C4P17516 323 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 ITGB5P18084 799 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 LPOP22079 712 aaPredicted RBP3.37□□□□□ -1.87
USP53-205ENST00000509769 THBS2P35442 1172 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 CCR9P51686 369 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 EMP1P54849 157 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 PER3P56645 1201 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 ERVK-16P61578 105 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 RHOAP61586 193 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 KCNAB1Q14722 419 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 PLGLAQ15195 96 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 SPIN3Q5JUX0 258 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 PWWP2BQ6NUJ5 590 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 CNIH2Q6PI25 160 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 ZNF695Q8IW36 515 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 GLB1L2Q8IW92 636 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 TOP6BLQ8N6T0 577 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 NECAP1Q8NC96 275 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 ZBTB44Q8NCP5 570 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 OR2T33Q8NG76 320 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 OR4N2Q8NGD1 307 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 CYP2W1Q8TAV3 490 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 PCNPQ8WW12 178 aaKnown RBP3.37□□□□□ -1.87
USP53-205ENST00000509769 LINC01599Q8WXQ3 324 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 DYRK2Q92630 601 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 TFAP2CQ92754 450 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 NTNG2Q96CW9 530 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 ECHDC3Q96DC8 303 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 REEP6Q96HR9 211 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 HPDLQ96IR7 371 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 CIB3Q96Q77 187 aaPredicted RBP3.37□□□□□ -1.87
USP53-205ENST00000509769 PIP5K1AQ99755 562 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 SLC46A2Q9BY10 475 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 PARD6GQ9BYG4 376 aaPredicted RBP3.37□□□□□ -1.87
USP53-205ENST00000509769 SLC52A2Q9HAB3 445 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 TMEM9BQ9NQ34 198 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 SEMA4GQ9NTN9 838 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 C14orf119Q9NWQ9 140 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 DHDHQ9UQ10 334 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 HEBP2Q9Y5Z4 205 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 CNTNAP2Q9UHC6 1331 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 C2orf72A6NCS6 295 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 DRGXA6NNA5 263 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 G3V3Y1 287 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 HRO43593 1189 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 OR7C2O60412 319 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 FBXO24O75426 580 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 APODP05090 189 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 GALTP07902 379 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 FABP2P12104 132 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 AREGP15514 252 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 ZNF43P17038 809 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 TRHRP34981 398 aaPredicted RBP3.37□□□□□ -1.87
USP53-205ENST00000509769 PLGLB1Q02325 96 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 SMAGPQ0VAQ4 97 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 LMAN2Q12907 356 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 NPRL3Q12980 569 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 BTG3Q14201 252 aaPredicted RBP3.37□□□□□ -1.87
USP53-205ENST00000509769 MFSD13AQ14CX5 517 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 JOSD1Q15040 202 aaPredicted RBP3.37□□□□□ -1.87
USP53-205ENST00000509769 TAF1CQ15572 869 aaPredicted RBP3.37□□□□□ -1.87
USP53-205ENST00000509769 TAZQ16635 292 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 PARP15Q460N3 678 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 RNASE12Q5GAN4 147 aaKnown RBP3.37□□□□□ -1.87
USP53-205ENST00000509769 SAMD13Q5VXD3 122 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 LETMD1Q6P1Q0 360 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 VWA1Q6PCB0 445 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 DCLRE1AQ6PJP8 1040 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 EEPD1Q7L9B9 569 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 NRMQ8IXM6 262 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 MMP21Q8N119 569 aa3.37□□□□□ -1.87
USP53-205ENST00000509769 FAM169BQ8N8A8 192 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms