RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, human

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-223	ENST00000494123	TPST1	O60507	370 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	BCAS1	O75363	584 aa	Predicted RBP	13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	STAMBP	O95630	424 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	ZNF682	O95780	498 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	HPN	P05981	417 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	UQCRB	P14927	111 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	HK1	P19367	917 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	PGC	P20142	388 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	TCEA1	P23193	301 aa	Known RBP	13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	RYK	P34925	604 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	SLC6A8	P48029	635 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	KCNJ5	P48544	419 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	NCALD	P61601	193 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	CYBRD1	Q53TN4	286 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	ZNF550	Q7Z398	422 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	GRAMD2A	Q8IUY3	354 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	ZNF563	Q8TA94	476 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	LZIC	Q8WZA0	190 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	PROX1	Q92786	737 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	CCDC124	Q96CT7	223 aa	Known RBP	13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	C1GALT1C1	Q96EU7	318 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	CLPTM1L	Q96KA5	538 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	PCDHAC1	Q9H158	963 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	LRMDA	Q9H2I8	198 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	EXO5	Q9H790	373 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	ZDHHC11	Q9H8X9	412 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	TAS2R10	Q9NYW0	307 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	BAG5	Q9UL15	447 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	SNX13	Q9Y5W8	968 aa		13.24	□□□□□ -0.29
BRCA1-223	ENST00000494123	FAM208B	Q5VWN6	2430 aa		13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123		A0A087WZY1	265 aa		13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123	CFAP73	A6NFT4	308 aa		13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123	ARPC2	O15144	300 aa		13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123	GSC2	O15499	205 aa		13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123	SUV39H1	O43463	412 aa		13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123	SERPINA1	P01009	418 aa		13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123	CELA3A	P09093	270 aa		13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123	MST1	P26927	711 aa		13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123	GCK	P35557	465 aa		13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123	DUSP7	Q16829	419 aa		13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123	CMPK2	Q5EBM0	449 aa		13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123	ARSK	Q6UWY0	536 aa		13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123	PRICKLE2	Q7Z3G6	844 aa		13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123	YRDC	Q86U90	279 aa	Known RBP	13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123	SIAH3	Q8IW03	269 aa		13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123	FAM83F	Q8NEG4	500 aa	Predicted RBP	13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123	TPD52L3	Q96J77	140 aa		13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123	NSMCE2	Q96MF7	247 aa		13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123	CADM1	Q9BY67	442 aa	Known RBP	13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123	MUC13	Q9H3R2	512 aa		13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123	RPS6KA6	Q9UK32	745 aa		13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123	RALY	Q9UKM9	306 aa	Known RBP	13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123	CHST2	Q9Y4C5	530 aa		13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123	COL6A6	A6NMZ7	2263 aa		13.23	□□□□□ -0.29
BRCA1-223	ENST00000494123		B8ZZF3	427 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	SYT5	O00445	386 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	FRS3	O43559	492 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	FES	P07332	822 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	C8B	P07358	591 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	LINGO3	P0C6S8	592 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	GKN3P	P0CG01	181 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	CD247	P20963	164 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	CRYBA2	P53672	197 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	RGS8	P57771	180 aa	Predicted RBP	13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	COPZ1	P61923	177 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	PLAUR	Q03405	335 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	ELOA	Q14241	798 aa	Known RBP	13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	TRIM25	Q14258	630 aa	Known RBP	13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	FXN	Q16595	210 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	GLIPR1L2	Q4G1C9	344 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	WIPI1	Q5MNZ9	446 aa	Predicted RBP	13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	RAET1L	Q5VY80	246 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	GPR119	Q8TDV5	335 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	SLC35B4	Q969S0	331 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	ARSG	Q96EG1	525 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	RNF145	Q96MT1	663 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	GPR137	Q96N19	417 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	OR2B2	Q9GZK3	357 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	EVA1A	Q9H8M9	152 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	GORASP2	Q9H8Y8	452 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	ACKR4	Q9NPB9	350 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	MED17	Q9NVC6	651 aa		13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	RPH3A	Q9Y2J0	694 aa	Predicted RBP	13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	MRPS18C	Q9Y3D5	142 aa	Known RBP	13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	PRRC2C	Q9Y520	2896 aa	Known RBP	13.22	□□□□□ -0.29
BRCA1-223	ENST00000494123	TRGV5	A0A0B4J1U4	118 aa		13.21	□□□□□ -0.29
BRCA1-223	ENST00000494123	LGI1	O95970	557 aa		13.21	□□□□□ -0.29
BRCA1-223	ENST00000494123	SELENOW	P63302	87 aa		13.21	□□□□□ -0.29
BRCA1-223	ENST00000494123	EPS8	Q12929	822 aa		13.21	□□□□□ -0.29
BRCA1-223	ENST00000494123	QPRT	Q15274	297 aa		13.21	□□□□□ -0.29
BRCA1-223	ENST00000494123	KRTCAP3	Q53RY4	240 aa		13.21	□□□□□ -0.29
BRCA1-223	ENST00000494123	ZNF324B	Q6AW86	544 aa	Predicted RBP	13.21	□□□□□ -0.29
BRCA1-223	ENST00000494123	DHFR2	Q86XF0	187 aa		13.21	□□□□□ -0.29
BRCA1-223	ENST00000494123	ULK2	Q8IYT8	1036 aa		13.21	□□□□□ -0.29
BRCA1-223	ENST00000494123	ZNF843	Q8N446	348 aa		13.21	□□□□□ -0.29
BRCA1-223	ENST00000494123	GPR32P1	Q8NGA4	272 aa		13.21	□□□□□ -0.29
BRCA1-223	ENST00000494123	TMEM234	Q8WY98	164 aa		13.21	□□□□□ -0.29
BRCA1-223	ENST00000494123	ZBTB8A	Q96BR9	441 aa		13.21	□□□□□ -0.29
BRCA1-223	ENST00000494123	ASB9	Q96DX5	294 aa		13.21	□□□□□ -0.29
BRCA1-223	ENST00000494123	SFXN2	Q96NB2	322 aa		13.21	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms