RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 RDH16O75452 317 aa15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 NDUFV2P19404 249 aa15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 TOR2AQ5JU69 321 aa15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 ASTLQ6HA08 431 aaPredicted RBP15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 ZNF852Q6ZMS4 543 aa15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 ZNF683Q8IZ20 524 aa15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 THEM6Q8WUY1 208 aa15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 B3GNT4Q9C0J1 378 aa15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 SLAMF7Q9NQ25 335 aa15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 ZNF639Q9UID6 485 aa15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 SCP2D1Q9UJQ7 156 aa15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 APC2O95996 2303 aa15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 GPX2P18283 190 aa15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 HTR2AP28223 471 aa15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 HOXA9P31269 272 aa15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 RPE65Q16518 533 aa15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 CCNJQ5T5M9 372 aa15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 C1orf189Q5VU69 101 aa15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 METAP1DQ6UB28 335 aaPredicted RBP15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 KCTD9Q7L273 389 aa15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 LRRC28Q86X40 367 aaPredicted RBP15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 GIMAP1Q8WWP7 306 aa15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 C7orf34Q96L11 122 aa15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 FBRSQ9HAH7 460 aa15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 KLRF1Q9NZS2 232 aa15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 PLEKHM1Q9Y4G2 1056 aa15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 A0A0A6YYC8 382 aaPredicted RBP15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 I3L1I5 382 aaPredicted RBP15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 HLA-DMAP28067 261 aa15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 OPCMLQ14982 345 aa15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 FOXRED2Q8IWF2 684 aa15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 BEST3Q8N1M1 668 aa15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 NR4A3Q92570 626 aa15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 CNOT9Q92600 299 aaKnown RBP15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 LMAN1LQ9HAT1 526 aa15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 PTTG3PQ9NZH4 202 aa15.27■□□□□ 0.03
CCDC88B-209ENST00000494080 C11orf98E9PRG8 122 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 GABRPO00591 440 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 PRKRAO75569 313 aaKnown RBP15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 PRH1P02810 166 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 TRAM1Q15629 374 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 ALOXE3Q9BYJ1 711 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 PRRG4Q9BZD6 226 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 TRBV2A0A0J9YWF9 115 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 H3BUI4 141 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 SGK494L7N484 410 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 SCO2O43819 266 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 SOX30O94993 753 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 HTR1AP08908 422 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 COX20Q5RI15 118 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 PARM1Q6UWI2 310 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 ALG8Q9BVK2 526 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 VN1R3Q9BXE9 311 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 MTHFD2LQ9H903 347 aaPredicted RBP15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 PLCXD1Q9NUJ7 323 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 PRODH2Q9UF12 536 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 PPT2Q9UMR5 302 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 COPS3Q9UNS2 423 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 FOXE1O00358 373 aaPredicted RBP15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 TACSTD2P09758 323 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 OC90Q02509 493 aaPredicted RBP15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 SHHQ15465 462 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 CYHR1Q6ZMK1 362 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 ZNF550Q7Z398 422 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 SERPINA12Q8IW75 414 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 MS4A15Q8N5U1 240 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 TIMM29Q9BSF4 260 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 GSX2Q9BZM3 304 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 IFT46Q9NQC8 304 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 C14orf105Q9NVL8 296 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 THAP10Q9P2Z0 257 aaPredicted RBP15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 SH2B3Q9UQQ2 575 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 AK6Q9Y3D8 172 aaKnown RBP15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 LRRTM2O43300 516 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 CSF3P09919 207 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 PCMT1P22061 227 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 ZCCHC12Q6PEW1 402 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 LYPD4Q6UWN0 246 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 BTN2A1Q7KYR7 527 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 ATCAYQ86WG3 371 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 TM9SF4Q92544 642 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 HSPA12BQ96MM6 686 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 OR2A14Q96R47 310 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 MFFQ9GZY8 342 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 MBNL1Q9NR56 388 aaKnown RBP15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 PADI2Q9Y2J8 665 aa15.26■□□□□ 0.03
CCDC88B-209ENST00000494080 CABIN1Q9Y6J0 2220 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 SLC5A10A0PJK1 596 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 METTL21EPA6NDL7 271 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 PSMD9O00233 223 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 MAN2B1O00754 1011 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 CHRNEQ04844 493 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 HES5Q5TA89 166 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 CCDC190Q86UF4 302 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 GLCCI1Q86VQ1 547 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 LNX2Q8N448 690 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 TREX2Q9BQ50 279 aaPredicted RBP15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 QRSL1Q9H0R6 528 aaKnown RBP15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 DDX31Q9H8H2 851 aaKnown RBP15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 OR2S2Q9NQN1 319 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms