RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 UBQLN4Q9NRR5 601 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 GRHL1Q9NZI5 618 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 ACTL7BQ9Y614 415 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 SLC25A15Q9Y619 301 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 A0A0A6YYJ9 748 aa12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 LOC390937A0A1W2PQ73 354 aa12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 FAM187AA6NFU0 413 aa12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 SLCO1B7G3V0H7 640 aa12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 ZNF195O14628 629 aa12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 CYTIPO60759 359 aa12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 ULK1O75385 1050 aa12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 LY6HO94772 140 aa12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 ANXA4P09525 319 aaPredicted RBP12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 EGR1P18146 543 aa12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 ENPP1P22413 925 aa12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 EDNRAP25101 427 aa12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 APOBEC3AP31941 199 aaPredicted RBP12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 MAGEA4P43358 317 aa12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 MAGEA12P43365 314 aa12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 SUMO3P55854 103 aaPredicted RBP12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 TMEM176BQ3YBM2 270 aaPredicted RBP12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 FAM174BQ3ZCQ3 159 aa12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 FAM71E1Q6IPT2 247 aa12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 CDRT4Q8N9R6 151 aa12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 ZNF382Q96SR6 550 aa12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 EBPLQ9BY08 206 aa12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 DPH5Q9H2P9 285 aa12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 MYNNQ9NPC7 610 aa12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 WBP11Q9Y2W2 641 aaKnown RBP12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 GPC6Q9Y625 555 aaPredicted RBP12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 TGP01266 2768 aa12.52□□□□□ -0.41
PRPF40A-211ENST00000493468 SCDO00767 359 aa12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 HSPA4LO95757 839 aa12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 PRPS2P11908 318 aa12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 HPGDP15428 266 aa12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 TSPAN8P19075 237 aa12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 HSD17B3P37058 310 aa12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 ZNF83P51522 516 aa12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 GUCY2DQ02846 1103 aa12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 CLCQ05315 142 aa12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 C2orf80Q0P641 193 aa12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 RASGEF1BQ0VAM2 473 aa12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 SELENBP1Q13228 472 aa12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 CD226Q15762 336 aa12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 C1QTNF12Q5T7M4 302 aa12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 FAM219BQ5XKK7 198 aa12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 MTERF4Q7Z6M4 381 aaKnown RBP12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 ZNF540Q8NDQ6 660 aa12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 FBXO27Q8NI29 283 aa12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 ZNF75CPQ92670 426 aaPredicted RBP12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 MRPL57Q9BQC6 102 aaKnown RBP12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 TRMOQ9BU70 441 aa12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 FKRPQ9H9S5 495 aa12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 EQTNQ9NQ60 294 aa12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 NTMQ9P121 344 aa12.51□□□□□ -0.41
PRPF40A-211ENST00000493468 PKD1L1Q8TDX9 2849 aa12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 IGHV3-15A0A0B4J1V0 119 aa12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 SERTM1A2A2V5 107 aa12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 A8MT66 165 aa12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 RAD51DO75771 328 aa12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 KCNK2O95069 426 aa12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 SLC7A1P30825 629 aa12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 PHC1P78364 1004 aa12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 CAV1Q03135 178 aa12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 ZNF117Q03924 483 aa12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 TRADDQ15628 312 aa12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 SWI5Q1ZZU3 235 aa12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 FBXW9Q5XUX1 488 aa12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 IKBIPQ70UQ0 350 aa12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 GALNT5Q7Z7M9 940 aa12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 ZAR1Q86SH2 424 aa12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 ZNF100Q8IYN0 542 aa12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 SEMA6DQ8NFY4 1073 aa12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 OR52N5Q8NH56 324 aa12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 CEP70Q8NHQ1 597 aa12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 MRGPRX4Q96LA9 322 aa12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 ZNF300Q96RE9 604 aaPredicted RBP12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 MRPL46Q9H2W6 279 aaKnown RBP12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 RNF14Q9UBS8 474 aa12.5□□□□□ -0.41
PRPF40A-211ENST00000493468 IGKV3D-15A0A087WSY6 115 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 M0R1B8 84 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 ETV2O00321 342 aaPredicted RBP12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 PRKCAP17252 672 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 HMOX2P30519 316 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 SRP14P37108 136 aaKnown RBP12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 PAFAH1B1P43034 410 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 SERPINB4P48594 390 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 HTR6P50406 440 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 P2RX1P51575 399 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 SLC25A53Q5H9E4 307 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 OR7E24Q6IFN5 339 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 DEF8Q6ZN54 512 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 GPRIN3Q6ZVF9 776 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 FAM76AQ8TAV0 307 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 METTL6Q8TCB7 284 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 HPS1Q92902 700 aa12.49□□□□□ -0.41
PRPF40A-211ENST00000493468 C3orf49Q96BT1 292 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms