RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 SLC7A8Q9UHI5 535 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 XPO7Q9UIA9 1087 aaKnown RBP4.7□□□□□ -1.66
USP40-213ENST00000483216 NAV1Q8NEY1 1877 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 UBR3Q6ZT12 1888 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 PNMA8CA0A1B0GUJ8 204 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 RGSL1A5PLK6 1076 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 CLDN25C9JDP6 229 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 K7EQG2 157 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 OGTO15294 1046 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 P2RX6O15547 441 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 ZNF749O43361 778 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 MRPS14O60783 128 aaKnown RBP4.69□□□□□ -1.66
USP40-213ENST00000483216 CLN5O75503 358 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 PRDM1O75626 825 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 APOA1P02647 267 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 CALB1P05937 261 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 P4HA1P13674 534 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 CCNA2P20248 432 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 IL10P22301 178 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 ME2P23368 584 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 LMO2P25791 158 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 RPL9P32969 192 aaKnown RBP4.69□□□□□ -1.66
USP40-213ENST00000483216 SERPINB5P36952 375 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 ALDH3B2P48448 385 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 KPNA2P52292 529 aaKnown RBP4.69□□□□□ -1.66
USP40-213ENST00000483216 RIDAP52758 137 aaKnown RBP4.69□□□□□ -1.66
USP40-213ENST00000483216 KRTAP10-3P60369 221 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 PDIA2Q13087 525 aaKnown RBP4.69□□□□□ -1.66
USP40-213ENST00000483216 ART3Q13508 389 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 GPR50Q13585 617 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 APOFQ13790 326 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 FLOT2Q14254 428 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 PIGHQ14442 188 aaPredicted RBP4.69□□□□□ -1.66
USP40-213ENST00000483216 BOLA3Q53S33 107 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 SLC25A30Q5SVS4 291 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 CGB2Q6NT52 195 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 XKRXQ6PP77 449 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 Q71RC1 249 aaPredicted RBP4.69□□□□□ -1.66
USP40-213ENST00000483216 TIPARPQ7Z3E1 657 aaKnown RBP4.69□□□□□ -1.66
USP40-213ENST00000483216 ITIH5Q86UX2 942 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 KCNMB4Q86W47 210 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 ATAD1Q8NBU5 361 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 CSNK1G2-AS1Q8NCQ2 148 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 ANGPTL6Q8NI99 470 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 TCP10LQ8TDR4 215 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 PDCD6IPQ8WUM4 868 aaKnown RBP4.69□□□□□ -1.66
USP40-213ENST00000483216 SMPDL3AQ92484 453 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 NABP1Q96AH0 204 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 BPIFA2Q96DR5 249 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 DCUN1D1Q96GG9 259 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 C1orf147Q96MC9 270 aaPredicted RBP4.69□□□□□ -1.66
USP40-213ENST00000483216 C9orf16Q9BUW7 83 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 OSBPL10Q9BXB5 764 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 STRADBQ9C0K7 418 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 ADNPQ9H2P0 1102 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 MOB1AQ9H8S9 216 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 SP140LQ9H930 580 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 MRM3Q9HC36 420 aaKnown RBP4.69□□□□□ -1.66
USP40-213ENST00000483216 MRPL17Q9NRX2 175 aaKnown RBP4.69□□□□□ -1.66
USP40-213ENST00000483216 RARRES3Q9UL19 164 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 ERGIC3Q9Y282 383 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 AP4B1Q9Y6B7 739 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 STYXL1Q9Y6J8 313 aa4.69□□□□□ -1.66
USP40-213ENST00000483216 A0A1B0GVG6 124 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 SDR42E2A6NKP2 422 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 TRPC5OSA6NMA1 111 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 H0YC42 278 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 NMT2O60551 498 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 UFL1O94874 794 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 PROSCO94903 275 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 LSM8O95777 96 aaKnown RBP4.68□□□□□ -1.66
USP40-213ENST00000483216 GH1P01241 217 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 KCNJ1P48048 391 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 NOVP48745 357 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 CSRP3P50461 194 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 AP3M2P53677 418 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 NME5P56597 212 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 BACE1P56817 501 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 YWHAEP62258 255 aaKnown RBP4.68□□□□□ -1.66
USP40-213ENST00000483216 KDSRQ06136 332 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 CEACAM7Q14002 265 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 SCARB2Q14108 478 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 TFDP2Q14188 446 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 SELPLGQ14242 412 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 SIX1Q15475 284 aaPredicted RBP4.68□□□□□ -1.66
USP40-213ENST00000483216 TSC22D1Q15714 1073 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 C15orf32Q32M92 178 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 TFDP3Q5H9I0 405 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 ZNF776Q68DI1 518 aaPredicted RBP4.68□□□□□ -1.66
USP40-213ENST00000483216 PRR5LQ6MZQ0 368 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 TTC33Q6PID6 262 aaPredicted RBP4.68□□□□□ -1.66
USP40-213ENST00000483216 ABRAXAS1Q6UWZ7 409 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 TIFABQ6ZNK6 161 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 MARCH9Q86YJ5 346 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 MMAAQ8IVH4 418 aaKnown RBP4.68□□□□□ -1.66
USP40-213ENST00000483216 FAM71AQ8IYT1 594 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 RNF149Q8NC42 400 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 OR13C5Q8NGS8 318 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 RDH11Q8TC12 318 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 SEPT8Q92599 483 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms