RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 CLDN20P56880 219 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 MTPNP58546 118 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 KCNJ10P78508 379 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 TXNL4AP83876 142 aaKnown RBP8.75□□□□□ -1.01
HDAC3-208ENST00000476739 HPCAP84074 193 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 FOXF1Q12946 379 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 CAPRIN1Q14444 709 aaKnown RBP8.75□□□□□ -1.01
HDAC3-208ENST00000476739 ADRM1Q16186 407 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 MTFR2Q6P444 385 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 AAGABQ6PD74 315 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 SPATA21Q7Z572 469 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 VRK2Q86Y07 508 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 LIX1LQ8IVB5 337 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 PM20D2Q8IYS1 436 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 UBQLNLQ8IYU4 475 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 ZNF808Q8N4W9 903 aaPredicted RBP8.75□□□□□ -1.01
HDAC3-208ENST00000476739 TMCO5AQ8N6Q1 288 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 NAXEQ8NCW5 288 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 FAM71CQ8NEG0 241 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 TNIP2Q8NFZ5 429 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 TSPEARQ8WU66 669 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 SDCCAG3Q96C92 435 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 RNF145Q96MT1 663 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 ANKRD27Q96NW4 1050 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 TRIB1Q96RU8 372 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 TREX2Q9BQ50 279 aaPredicted RBP8.75□□□□□ -1.01
HDAC3-208ENST00000476739 SLC39A3Q9BRY0 314 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 THUMPD3Q9BV44 507 aaKnown RBP8.75□□□□□ -1.01
HDAC3-208ENST00000476739 LAT2Q9GZY6 243 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 P2RX2Q9UBL9 471 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 PLEKHB1Q9UF11 243 aaPredicted RBP8.75□□□□□ -1.01
HDAC3-208ENST00000476739 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.75□□□□□ -1.01
HDAC3-208ENST00000476739 Q9UFV3 132 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 CHST2Q9Y4C5 530 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 GMEB1Q9Y692 573 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 COL12A1Q99715 3063 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 DSPPQ9NZW4 1301 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 LRRK2Q5S007 2527 aa8.75□□□□□ -1.01
HDAC3-208ENST00000476739 DOPEY1Q5JWR5 2465 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 A0A087WZY1 265 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 GMNCA6NCL1 334 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 CLCA1A8K7I4 914 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 H0Y3Z8 333 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 SEC14L5O43304 696 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 EIF4E2O60573 245 aaKnown RBP8.74□□□□□ -1.01
HDAC3-208ENST00000476739 DNAJA2O60884 412 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 NUDT14O95848 222 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 EPPINO95925 133 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 PRKCAP17252 672 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 GPX2P18283 190 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 POU3F2P20265 443 aaPredicted RBP8.74□□□□□ -1.01
HDAC3-208ENST00000476739 SHC1P29353 583 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 MAGEA8P43361 318 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 ANXA11P50995 505 aaKnown RBP8.74□□□□□ -1.01
HDAC3-208ENST00000476739 CCR4P51679 360 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 ZNF41P51814 821 aaPredicted RBP8.74□□□□□ -1.01
HDAC3-208ENST00000476739 CRISP3P54108 245 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 FADDQ13158 208 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 NFYCQ13952 458 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 GLYR1Q49A26 553 aaPredicted RBP8.74□□□□□ -1.01
HDAC3-208ENST00000476739 GCNT6Q5T4J0 391 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 MRPL2Q5T653 305 aaKnown RBP8.74□□□□□ -1.01
HDAC3-208ENST00000476739 NSUN5P2Q63ZY6 315 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 REP15Q6BDI9 236 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 TMEM211Q6ICI0 200 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 ENPP6Q6UWR7 440 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 ZNF836Q6ZNA1 936 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 EIF3MQ7L2H7 374 aaKnown RBP8.74□□□□□ -1.01
HDAC3-208ENST00000476739 ADGRE4PQ86SQ3 457 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 GGNQ86UU5 652 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 SNX32Q86XE0 403 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 TREML1Q86YW5 311 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 GTPBP8Q8N3Z3 284 aaPredicted RBP8.74□□□□□ -1.01
HDAC3-208ENST00000476739 POU5F2Q8N7G0 328 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 C9orf106Q8NAJ2 232 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 OR10Q1Q8NGQ4 319 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 OR5W2Q8NH69 310 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 FBXO27Q8NI29 283 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 NFKBIDQ8NI38 313 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 ZPLD1Q8TCW7 415 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 SMPDL3BQ92485 455 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 CNOT9Q92600 299 aaKnown RBP8.74□□□□□ -1.01
HDAC3-208ENST00000476739 RND1Q92730 232 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 ZNF845Q96IR2 970 aaPredicted RBP8.74□□□□□ -1.01
HDAC3-208ENST00000476739 RSRC1Q96IZ7 334 aaKnown RBP8.74□□□□□ -1.01
HDAC3-208ENST00000476739 CGREF1Q99674 301 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 PIGQQ9BRB3 760 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 CCDC106Q9BWC9 280 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 UCK2Q9BZX2 261 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 TMEM185BQ9H7F4 350 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 MTHFD2LQ9H903 347 aaPredicted RBP8.74□□□□□ -1.01
HDAC3-208ENST00000476739 A4GALTQ9NPC4 353 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 RLIMQ9NVW2 624 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 DNAJB12Q9NXW2 375 aaKnown RBP8.74□□□□□ -1.01
HDAC3-208ENST00000476739 DOCK7Q96N67 2140 aa8.74□□□□□ -1.01
HDAC3-208ENST00000476739 SPTBN1Q01082 2364 aaKnown RBP8.73□□□□□ -1.01
HDAC3-208ENST00000476739 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 C7orf72A4D263 438 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 NKX2-6A6NCS4 301 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 CD8B2A6NJW9 211 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms