RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 SGCBQ16585 318 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 ESPNLQ6ZVH7 1005 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 ZNF550Q7Z398 422 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 KRTAP1-3Q8IUG1 177 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 LILRA2Q8N149 483 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 MIPOL1Q8TD10 442 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 TESCQ96BS2 214 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 HOXD1Q9GZZ0 328 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 KCNK9Q9NPC2 374 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 PLSCR4Q9NRQ2 329 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 DTNAQ9Y4J8 743 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 RAI1Q7Z5J4 1906 aaPredicted RBP12.61□□□□□ -0.39
UPF3A-204ENST00000475218 PRAMEF27A3QJZ7 478 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 ETV2O00321 342 aaPredicted RBP12.61□□□□□ -0.39
UPF3A-204ENST00000475218 DNAJA2O60884 412 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 RAF1P04049 648 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 THBDP07204 575 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 KRT16P08779 473 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 FCGR2AP12318 317 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 CD53P19397 219 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 ATP6V1C1P21283 382 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 MATN1P21941 496 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 IL12AP29459 219 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 P2RX1P51575 399 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 CASP8Q14790 479 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 MAPK14Q16539 360 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 SPANXN4Q5MJ08 99 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 PDZK1Q5T2W1 519 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 HEPHL1Q6MZM0 1159 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 OGFOD2Q6N063 350 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 FBXO27Q8NI29 283 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 GMPPAQ96IJ6 420 aaPredicted RBP12.61□□□□□ -0.39
UPF3A-204ENST00000475218 KLHL15Q96M94 604 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 HS3ST6Q96QI5 342 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 ALPK1Q96QP1 1244 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 ZNF350Q9GZX5 532 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 COQ10BQ9H8M1 238 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 HHATLQ9HCP6 504 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 ELOVL5Q9NYP7 299 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 C9JVG2 144 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 SNNO75324 88 aaPredicted RBP12.6□□□□□ -0.39
UPF3A-204ENST00000475218 UGT2B17O75795 530 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 POU2F1P14859 743 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 CRYGSP22914 178 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 DNASE1P24855 282 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 SFTPDP35247 375 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 SUMO3P55854 103 aaPredicted RBP12.6□□□□□ -0.39
UPF3A-204ENST00000475218 SKP2Q13309 424 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 ZNF141Q15928 474 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 ZNF239Q16600 458 aaKnown RBP12.6□□□□□ -0.39
UPF3A-204ENST00000475218 ARHGAP11BQ3KRB8 267 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 SLC25A53Q5H9E4 307 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 AP1ARQ63HQ0 302 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 SAXO2Q658L1 398 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 HBMQ6B0K9 141 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 ZNF771Q7L3S4 317 aaPredicted RBP12.6□□□□□ -0.39
UPF3A-204ENST00000475218 TGIF2LYQ8IUE0 185 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 OR4A15Q8NGL6 344 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 OR6K3Q8NGY3 331 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 RNF128Q8TEB7 428 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 ROBO4Q8WZ75 1007 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 OSTF1Q92882 214 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 DPY30Q9C005 99 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 NMUR2Q9GZQ4 415 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 OR51I1Q9H343 314 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 NDRG3Q9UGV2 375 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 PROCRQ9UNN8 238 aa12.6□□□□□ -0.39
UPF3A-204ENST00000475218 FREM1Q5H8C1 2179 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 PRSS51A0A1B0GVH4 220 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 SERINC4A6NH21 518 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 C16orf97H3BN30 126 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 ZNF195O14628 629 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 SNUPNO95149 360 aaKnown RBP12.59□□□□□ -0.39
UPF3A-204ENST00000475218 LBPP18428 481 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 KLK2P20151 261 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 ELK4P28324 431 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 AGTR1P30556 359 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 UFM1P61960 85 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 ADAM8P78325 824 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 FGFBP1Q14512 234 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 DEFB113Q30KQ7 82 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 FBXW10Q5XX13 1052 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 ANKRD34AQ69YU3 496 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 PPP4R4Q6NUP7 873 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 STAC2Q6ZMT1 411 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 CXorf67Q86X51 503 aaPredicted RBP12.59□□□□□ -0.39
UPF3A-204ENST00000475218 LRRC34Q8IZ02 419 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 ANKRD42Q8N9B4 389 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 ZNF527Q8NB42 609 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 ABHD3Q8WU67 409 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 RAB8BQ92930 207 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 ZG16BQ96DA0 208 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 SLC35G5Q96KT7 338 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 WDR55Q9H6Y2 383 aaPredicted RBP12.59□□□□□ -0.39
UPF3A-204ENST00000475218 DLL4Q9NR61 685 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 AIG1Q9NVV5 245 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 PAQR5Q9NXK6 330 aaPredicted RBP12.59□□□□□ -0.39
UPF3A-204ENST00000475218 ING1Q9UK53 422 aaPredicted RBP12.59□□□□□ -0.39
UPF3A-204ENST00000475218 MKLN1Q9UL63 735 aa12.59□□□□□ -0.39
UPF3A-204ENST00000475218 TMEM120BA0PK00 339 aa12.58□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms