RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 SOAT1P35610 550 aa16.6■□□□□ 0.25
COL7A1-209ENST00000474432 SUMO3P55854 103 aaPredicted RBP16.6■□□□□ 0.25
COL7A1-209ENST00000474432 WDR4P57081 412 aaKnown RBP16.6■□□□□ 0.25
COL7A1-209ENST00000474432 ADAM8P78325 824 aa16.6■□□□□ 0.25
COL7A1-209ENST00000474432 BST1Q10588 318 aa16.6■□□□□ 0.25
COL7A1-209ENST00000474432 DEFB113Q30KQ7 82 aa16.6■□□□□ 0.25
COL7A1-209ENST00000474432 HBMQ6B0K9 141 aa16.6■□□□□ 0.25
COL7A1-209ENST00000474432 KRTAP1-3Q8IUG1 177 aa16.6■□□□□ 0.25
COL7A1-209ENST00000474432 OR6K3Q8NGY3 331 aa16.6■□□□□ 0.25
COL7A1-209ENST00000474432 FBXO27Q8NI29 283 aa16.6■□□□□ 0.25
COL7A1-209ENST00000474432 OSTF1Q92882 214 aa16.6■□□□□ 0.25
COL7A1-209ENST00000474432 ARSGQ96EG1 525 aa16.6■□□□□ 0.25
COL7A1-209ENST00000474432 KLHL15Q96M94 604 aa16.6■□□□□ 0.25
COL7A1-209ENST00000474432 SLC39A3Q9BRY0 314 aa16.6■□□□□ 0.25
COL7A1-209ENST00000474432 SRXN1Q9BYN0 137 aa16.6■□□□□ 0.25
COL7A1-209ENST00000474432 NUF2Q9BZD4 464 aa16.6■□□□□ 0.25
COL7A1-209ENST00000474432 DLL4Q9NR61 685 aa16.6■□□□□ 0.25
COL7A1-209ENST00000474432 PAQR5Q9NXK6 330 aaPredicted RBP16.6■□□□□ 0.25
COL7A1-209ENST00000474432 STOML1Q9UBI4 398 aa16.6■□□□□ 0.25
COL7A1-209ENST00000474432 ROS1P08922 2347 aa16.6■□□□□ 0.25
COL7A1-209ENST00000474432 C16orf97H3BN30 126 aa16.59■□□□□ 0.25
COL7A1-209ENST00000474432 CASKO14936 926 aa16.59■□□□□ 0.25
COL7A1-209ENST00000474432 THBDP07204 575 aa16.59■□□□□ 0.25
COL7A1-209ENST00000474432 MATN1P21941 496 aa16.59■□□□□ 0.25
COL7A1-209ENST00000474432 ELK4P28324 431 aa16.59■□□□□ 0.25
COL7A1-209ENST00000474432 ADH6P28332 368 aa16.59■□□□□ 0.25
COL7A1-209ENST00000474432 EIF1P41567 113 aaKnown RBP16.59■□□□□ 0.25
COL7A1-209ENST00000474432 FOXD4Q12950 439 aaPredicted RBP16.59■□□□□ 0.25
COL7A1-209ENST00000474432 ZNF141Q15928 474 aa16.59■□□□□ 0.25
COL7A1-209ENST00000474432 SLC25A53Q5H9E4 307 aa16.59■□□□□ 0.25
COL7A1-209ENST00000474432 AP1ARQ63HQ0 302 aa16.59■□□□□ 0.25
COL7A1-209ENST00000474432 HEPHL1Q6MZM0 1159 aa16.59■□□□□ 0.25
COL7A1-209ENST00000474432 ANKRD46Q86W74 232 aa16.59■□□□□ 0.25
COL7A1-209ENST00000474432 CXorf67Q86X51 503 aaPredicted RBP16.59■□□□□ 0.25
COL7A1-209ENST00000474432 ZNF527Q8NB42 609 aa16.59■□□□□ 0.25
COL7A1-209ENST00000474432 MIPOL1Q8TD10 442 aa16.59■□□□□ 0.25
COL7A1-209ENST00000474432 TESCQ96BS2 214 aa16.59■□□□□ 0.25
COL7A1-209ENST00000474432 TEX37Q96LM6 180 aa16.59■□□□□ 0.25
COL7A1-209ENST00000474432 PRRG4Q9BZD6 226 aa16.59■□□□□ 0.25
COL7A1-209ENST00000474432 NMUR2Q9GZQ4 415 aa16.59■□□□□ 0.25
COL7A1-209ENST00000474432 COQ10BQ9H8M1 238 aa16.59■□□□□ 0.25
COL7A1-209ENST00000474432 MEAF6Q9HAF1 191 aa16.59■□□□□ 0.25
COL7A1-209ENST00000474432 EDARQ9UNE0 448 aa16.59■□□□□ 0.25
COL7A1-209ENST00000474432 RNF103-CHMP3A0A140T963 221 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 PRSS51A0A1B0GVH4 220 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 ZNF195O14628 629 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 UGT2B17O75795 530 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 SNUPNO95149 360 aaKnown RBP16.58■□□□□ 0.24
COL7A1-209ENST00000474432 ALDOCP09972 364 aaKnown RBP16.58■□□□□ 0.24
COL7A1-209ENST00000474432 SFTPDP35247 375 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 CASP9P55211 416 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 FUT5Q11128 374 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 STX3Q13277 289 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 KEAP1Q14145 624 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 CASP8Q14790 479 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 MAPK14Q16539 360 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 ZNF239Q16600 458 aaKnown RBP16.58■□□□□ 0.24
COL7A1-209ENST00000474432 ARHGAP11BQ3KRB8 267 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 SPANXN4Q5MJ08 99 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 PDZK1Q5T2W1 519 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 ANKRD34AQ69YU3 496 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 PPP4R4Q6NUP7 873 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 BHLHB9Q6PI77 547 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 STAC2Q6ZMT1 411 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 LRRC34Q8IZ02 419 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 RNF128Q8TEB7 428 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 ROBO4Q8WZ75 1007 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 SLC35G5Q96KT7 338 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 HS3ST6Q96QI5 342 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 DPY30Q9C005 99 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 ZNF350Q9GZX5 532 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 OR51I1Q9H343 314 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 CENPHQ9H3R5 247 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 KCNK9Q9NPC2 374 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 MCTS1Q9ULC4 181 aaKnown RBP16.58■□□□□ 0.24
COL7A1-209ENST00000474432 EMC9Q9Y3B6 208 aa16.58■□□□□ 0.24
COL7A1-209ENST00000474432 GPC6Q9Y625 555 aaPredicted RBP16.58■□□□□ 0.24
COL7A1-209ENST00000474432 PRAMEF27A3QJZ7 478 aa16.57■□□□□ 0.24
COL7A1-209ENST00000474432 SERINC4A6NH21 518 aa16.57■□□□□ 0.24
COL7A1-209ENST00000474432 H3BNH8 94 aa16.57■□□□□ 0.24
COL7A1-209ENST00000474432 SDHDO14521 159 aa16.57■□□□□ 0.24
COL7A1-209ENST00000474432 ZNF264O43296 627 aa16.57■□□□□ 0.24
COL7A1-209ENST00000474432 EIF4E2O60573 245 aaKnown RBP16.57■□□□□ 0.24
COL7A1-209ENST00000474432 BCAS1O75363 584 aaPredicted RBP16.57■□□□□ 0.24
COL7A1-209ENST00000474432 TUBBP07437 444 aa16.57■□□□□ 0.24
COL7A1-209ENST00000474432 LBPP18428 481 aa16.57■□□□□ 0.24
COL7A1-209ENST00000474432 ME2P23368 584 aa16.57■□□□□ 0.24
COL7A1-209ENST00000474432 AGTR1P30556 359 aa16.57■□□□□ 0.24
COL7A1-209ENST00000474432 HOXC12P31275 282 aa16.57■□□□□ 0.24
COL7A1-209ENST00000474432 KCNJ5P48544 419 aa16.57■□□□□ 0.24
COL7A1-209ENST00000474432 CARD18P57730 90 aa16.57■□□□□ 0.24
COL7A1-209ENST00000474432 PLAURQ03405 335 aa16.57■□□□□ 0.24
COL7A1-209ENST00000474432 SKP2Q13309 424 aa16.57■□□□□ 0.24
COL7A1-209ENST00000474432 EXOC3L2Q2M3D2 409 aa16.57■□□□□ 0.24
COL7A1-209ENST00000474432 SAXO2Q658L1 398 aa16.57■□□□□ 0.24
COL7A1-209ENST00000474432 OGFOD2Q6N063 350 aa16.57■□□□□ 0.24
COL7A1-209ENST00000474432 OR4A15Q8NGL6 344 aa16.57■□□□□ 0.24
COL7A1-209ENST00000474432 OR5W2Q8NH69 310 aa16.57■□□□□ 0.24
COL7A1-209ENST00000474432 MED18Q9BUE0 208 aa16.57■□□□□ 0.24
COL7A1-209ENST00000474432 GLRX2Q9NS18 164 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms