RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 KRTCAP2Q8N6L1 136 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 ZNF611Q8N823 705 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 C15orf54Q8N8G6 183 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 OR56B1Q8NGI3 324 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 NMNAT2Q9BZQ4 307 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 ARPC1BO15143 372 aaKnown RBP12.56□□□□□ -0.4
COL6A3-209ENST00000472056 TGM5O43548 720 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 LMO2P25791 158 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 PLGLB1Q02325 96 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 RNF111Q6ZNA4 994 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 GALNT10Q86SR1 603 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 OR9A2Q8NGT5 310 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 SMPDL3BQ92485 455 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 MARC2Q969Z3 335 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 SGK3Q96BR1 496 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 PTCHD1Q96NR3 888 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 RIMS3Q9UJD0 308 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 OR1A2Q9Y585 309 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 FOXE1O00358 373 aaPredicted RBP12.56□□□□□ -0.4
COL6A3-209ENST00000472056 FZD7O75084 574 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 ADRB1P08588 477 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 SPP1P10451 314 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 ZNF133P52736 654 aaPredicted RBP12.56□□□□□ -0.4
COL6A3-209ENST00000472056 UQCC3Q6UW78 93 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 NXPE4Q6UWF7 544 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 DTWD1Q8N5C7 304 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 SCARB1Q8WTV0 552 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 PMEPA1Q969W9 287 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 PRTFDC1Q9NRG1 225 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 MYLKQ15746 1914 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 SNCAP37840 140 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 TBPL1P62380 186 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 RNF4P78317 190 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 AAK1Q2M2I8 961 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 SLAIN1Q8ND83 568 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 MED18Q9BUE0 208 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 FN3KRPQ9HA64 309 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 KPTNQ9Y664 436 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 IGKV6D-41A0A0C4DH26 115 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 CD300LBA8K4G0 201 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 NME4O00746 187 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 ICMTO60725 284 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 ALX3O95076 343 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 ACP5P13686 325 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 SOX3P41225 446 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 HCCSP53701 268 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 COX15Q7KZN9 410 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 CDRT4Q8N9R6 151 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 UBL7Q96S82 380 aaPredicted RBP12.56□□□□□ -0.4
COL6A3-209ENST00000472056 PDGFAP04085 211 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 ALPLP05186 524 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 C8AP07357 584 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 JUNBP17275 347 aaPredicted RBP12.56□□□□□ -0.4
COL6A3-209ENST00000472056 FIGNL1Q6PIW4 674 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 PQLC3Q8N755 202 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 OR51Q1Q8NH59 317 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 GPR152Q8TDT2 470 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 MIB2Q96AX9 1013 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 SLC39A13Q96H72 371 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 SLC6A17Q9H1V8 727 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 ANKRD19PQ9H560 264 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 NCDNQ9UBB6 729 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 DNAJC15Q9Y5T4 150 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 GRXCR1A8MXD5 290 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 H7BY64 318 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 EMX1Q04741 257 aaPredicted RBP12.56□□□□□ -0.4
COL6A3-209ENST00000472056 ODF4Q2M2E3 257 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 TMEM163Q8TC26 289 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 NDRG1Q92597 394 aaKnown RBP12.56□□□□□ -0.4
COL6A3-209ENST00000472056 C11orf49Q9H6J7 331 aa12.56□□□□□ -0.4
COL6A3-209ENST00000472056 SLC7A9P82251 487 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 TCTE1Q5JU00 501 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 OR4C11Q6IEV9 310 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 PLBD1Q6P4A8 553 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 OR13F1Q8NGS4 319 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 OR10K1Q8NGX5 313 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 OR4Q3Q8NH05 313 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 ZFP90Q8TF47 636 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 XYLT2Q9H1B5 865 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 ARAP2Q8WZ64 1704 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 DVL2O14641 736 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 SLC31A1O15431 190 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 OR2F2O95006 317 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 OR2F1Q13607 317 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 SNTB1Q13884 538 aaKnown RBP12.55□□□□□ -0.4
COL6A3-209ENST00000472056 ENTHD1Q8IYW4 607 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 KLHDC1Q8N7A1 406 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 SPRYD4Q8WW59 207 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-209ENST00000472056 IGFLR1Q9H665 355 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 SCN5AQ14524 2016 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 APOA2P02652 100 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 NAA10P41227 235 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-209ENST00000472056 KCNQ1P51787 676 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 LRP8Q14114 963 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 OTUD1Q5VV17 481 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-209ENST00000472056 OR51B5Q9H339 312 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 RANGRFQ9HD47 186 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-209ENST00000472056 TESQ9UGI8 421 aaKnown RBP12.55□□□□□ -0.4
COL6A3-209ENST00000472056 ANHXE9PGG2 379 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 HPGDSO60760 199 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms