RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 MYBPHQ13203 477 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 CBFBQ13951 182 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 NDUFAF6Q330K2 333 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 FBXL19-AS1Q494R0 122 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 TIGD2Q4W5G0 525 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 TYW3Q6IPR3 259 aaKnown RBP13.68□□□□□ -0.22
LIMS3-201ENST00000437679 DNAJC14Q6Y2X3 702 aaPredicted RBP13.68□□□□□ -0.22
LIMS3-201ENST00000437679 EIF3MQ7L2H7 374 aaKnown RBP13.68□□□□□ -0.22
LIMS3-201ENST00000437679 OLIG3Q7RTU3 272 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 GGNQ86UU5 652 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 GCNT2Q8N0V5 402 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 OR5W2Q8NH69 310 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 PNPT1Q8TCS8 783 aaKnown RBP13.68□□□□□ -0.22
LIMS3-201ENST00000437679 VPS33AQ96AX1 596 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 KLHDC3Q9BQ90 382 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 EBF4Q9BQW3 602 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 LAT2Q9GZY6 243 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 PAQR5Q9NXK6 330 aaPredicted RBP13.68□□□□□ -0.22
LIMS3-201ENST00000437679 KCNN3Q9UGI6 736 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 GPC6Q9Y625 555 aaPredicted RBP13.68□□□□□ -0.22
LIMS3-201ENST00000437679 APCP25054 2843 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 CYP7B1O75881 506 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 H6PDO95479 791 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 CSTAP01040 98 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 C1QCP02747 245 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 CRHP06850 196 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 ZCCHC18P0CG32 403 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 ELK4P28324 431 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 ADH6P28332 368 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 MRPL19P49406 292 aaKnown RBP13.67□□□□□ -0.22
LIMS3-201ENST00000437679 TLE4Q04727 773 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 FUT5Q11128 374 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 FOXF1Q12946 379 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 PON3Q15166 354 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 C6orf10Q5SRN2 563 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 PDSS1Q5T2R2 415 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 PPP4R4Q6NUP7 873 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 FRRS1Q6ZNA5 592 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 ESPNLQ6ZVH7 1005 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 POC1BQ8TC44 478 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 GPR119Q8TDV5 335 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 ZFP90Q8TF47 636 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 FIG4Q92562 907 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 ARSGQ96EG1 525 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 ZNF845Q96IR2 970 aaPredicted RBP13.67□□□□□ -0.22
LIMS3-201ENST00000437679 TRNT1Q96Q11 434 aaKnown RBP13.67□□□□□ -0.22
LIMS3-201ENST00000437679 NPAS1Q99742 590 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 ZNF559Q9BR84 538 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 PRRG4Q9BZD6 226 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 SAP130Q9H0E3 1048 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 PIGMQ9H3S5 423 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 TMEM185BQ9H7F4 350 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 KCNE5Q9UJ90 142 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 SLC35A3Q9Y2D2 325 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 L3MBTL1Q9Y468 752 aa13.67□□□□□ -0.22
LIMS3-201ENST00000437679 CENPVL1A0A0U1RR11 272 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 A0A1W2PNV4 684 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 OPN1LWP04000 364 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 UBTFL6P0CB48 400 aaPredicted RBP13.66□□□□□ -0.22
LIMS3-201ENST00000437679 NR2F1P10589 423 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 FCGR2AP12318 317 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 KIR2DL3P43628 341 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 CPA2P48052 419 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 IRX1P78414 480 aaPredicted RBP13.66□□□□□ -0.22
LIMS3-201ENST00000437679 CHRNEQ04844 493 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 FGFBP1Q14512 234 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 COX20Q5RI15 118 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 AP1ARQ63HQ0 302 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 LRRC74BQ6ZQY2 392 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 KIF18BQ86Y91 864 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 LILRA2Q8N149 483 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 ANKFN1Q8N957 763 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 CNEP1R1Q8N9A8 125 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 OR10D3Q8NH80 312 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 OR2V1Q8NHB1 315 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 FBXO27Q8NI29 283 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 FNDC9Q8TBE3 224 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 MRGPRX4Q96LA9 322 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 KLHL15Q96M94 604 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 THUMPD3Q9BV44 507 aaKnown RBP13.66□□□□□ -0.22
LIMS3-201ENST00000437679 TPT1P8Q9HAU6 139 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 MCCC2Q9HCC0 563 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.66□□□□□ -0.22
LIMS3-201ENST00000437679 SLC6A13Q9NSD5 602 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 JKAMPQ9P055 326 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 PACSIN3Q9UKS6 424 aa13.66□□□□□ -0.22
LIMS3-201ENST00000437679 MCTS1Q9ULC4 181 aaKnown RBP13.66□□□□□ -0.22
LIMS3-201ENST00000437679 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 PRAMEF27A3QJZ7 478 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 GJE1A6NN92 205 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 TNFSF11O14788 317 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 ADAMDEC1O15204 470 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 TNFSF13O75888 250 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 SYNGR4O95473 234 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 PRKCAP17252 672 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 PGCP20142 388 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 SFTPDP35247 375 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 CRATP43155 626 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 ATP4BP51164 291 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 SKP2Q13309 424 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms