RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 TMEM35AQ53FP2 167 aa13.62□□□□□ -0.23
PTPRU-204ENST00000428026 AGAP7PQ5VUJ5 663 aa13.62□□□□□ -0.23
PTPRU-204ENST00000428026 PDZD3Q86UT5 571 aa13.62□□□□□ -0.23
PTPRU-204ENST00000428026 STEAP2Q8NFT2 490 aa13.62□□□□□ -0.23
PTPRU-204ENST00000428026 ABHD5Q8WTS1 349 aa13.62□□□□□ -0.23
PTPRU-204ENST00000428026 CENPOQ9BU64 300 aa13.62□□□□□ -0.23
PTPRU-204ENST00000428026 OLAHQ9NV23 265 aa13.62□□□□□ -0.23
PTPRU-204ENST00000428026 TOGARAM1Q9Y4F4 1720 aa13.62□□□□□ -0.23
PTPRU-204ENST00000428026 FABP7O15540 132 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 FADS1O60427 444 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 GMDSO60547 372 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 ICMTO60725 284 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 UBBP0CG47 229 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 UBCP0CG48 685 aaKnown RBP13.61□□□□□ -0.23
PTPRU-204ENST00000428026 CXADRP78310 365 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 SF3B4Q15427 424 aaKnown RBP eCLIP13.61□□□□□ -0.236e-7■■■□□ 14.6
PTPRU-204ENST00000428026 FRMPD2BQ6IN97 320 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 SGPP2Q8IWX5 399 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 TMEM102Q8N9M5 508 aaPredicted RBP13.61□□□□□ -0.23
PTPRU-204ENST00000428026 SUMF2Q8NBJ7 301 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 GPR148Q8TDV2 347 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 FGF13Q92913 245 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 FOXN4Q96NZ1 517 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 MACROD1Q9BQ69 325 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 TSTD3H0UI37 97 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 ADAM12O43184 909 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 CD70P32970 193 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 GAB1Q13480 694 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 PODNL1Q6PEZ8 512 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 TECPR1Q7Z6L1 1165 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 ZNF695Q8IW36 515 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 NLGN4XQ8N0W4 816 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 PRR18Q8N4B5 295 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 DNAAF1Q8NEP3 725 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 PINK1Q9BXM7 581 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 NT5DC2Q9H857 520 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 OR1A2Q9Y585 309 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 TSPAN11A1L157 253 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 GABRPO00591 440 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 ARHGAP33O14559 1287 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 DVL2O14641 736 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 RNH1P13489 461 aaKnown RBP13.61□□□□□ -0.23
PTPRU-204ENST00000428026 C6P13671 934 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 NTSR1P30989 418 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 SELENOVP59797 346 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 GPR50Q13585 617 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 TSSK4Q6SA08 328 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 ARHGAP12Q8IWW6 846 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 TMEM239Q8WW34 195 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 TGM7Q96PF1 710 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 TRAV27A0A087WT01 109 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 ARNTLO00327 626 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 RNASET2O00584 256 aaKnown RBP13.61□□□□□ -0.23
PTPRU-204ENST00000428026 ERVFC1P60507 584 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 RPS15AP62244 130 aaKnown RBP13.61□□□□□ -0.23
PTPRU-204ENST00000428026 DBPQ10586 325 aaPredicted RBP13.61□□□□□ -0.23
PTPRU-204ENST00000428026 SHHQ15465 462 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 MAMDC2Q7Z304 686 aaPredicted RBP13.61□□□□□ -0.23
PTPRU-204ENST00000428026 RETREG3Q86VR2 466 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 MDGA1Q8NFP4 955 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 ELP4Q96EB1 424 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 ZNF419Q96HQ0 510 aaPredicted RBP13.61□□□□□ -0.23
PTPRU-204ENST00000428026 CNOT2Q9NZN8 540 aaKnown RBP13.61□□□□□ -0.23
PTPRU-204ENST00000428026 TESQ9UGI8 421 aaKnown RBP13.61□□□□□ -0.23
PTPRU-204ENST00000428026 ATG4BQ9Y4P1 393 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 AK1P00568 194 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 APEHP13798 732 aaKnown RBP13.61□□□□□ -0.23
PTPRU-204ENST00000428026 MANEALQ5VSG8 457 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 RAET1LQ5VY80 246 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 PM20D1Q6GTS8 502 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 GPR155Q7Z3F1 870 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 LRRC28Q86X40 367 aaPredicted RBP13.61□□□□□ -0.23
PTPRU-204ENST00000428026 SMIM14Q96QK8 99 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 UHRF1Q96T88 793 aaPredicted RBP13.61□□□□□ -0.23
PTPRU-204ENST00000428026 SLC6A16Q9GZN6 736 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 IL26Q9NPH9 171 aa13.61□□□□□ -0.23
PTPRU-204ENST00000428026 PRRC2BQ5JSZ5 2229 aaKnown RBP13.6□□□□□ -0.23
PTPRU-204ENST00000428026 A0A1W2PQU0 124 aa13.6□□□□□ -0.23
PTPRU-204ENST00000428026 YY2O15391 372 aa13.6□□□□□ -0.23
PTPRU-204ENST00000428026 VEGFDO43915 354 aa13.6□□□□□ -0.23
PTPRU-204ENST00000428026 SYNGR4O95473 234 aa13.6□□□□□ -0.23
PTPRU-204ENST00000428026 IL1AP01583 271 aa13.6□□□□□ -0.23
PTPRU-204ENST00000428026 SERPINA5P05154 406 aa13.6□□□□□ -0.23
PTPRU-204ENST00000428026 ARAFP10398 606 aa13.6□□□□□ -0.23
PTPRU-204ENST00000428026 ARSBP15848 533 aa13.6□□□□□ -0.23
PTPRU-204ENST00000428026 ZNF91Q05481 1191 aa13.6□□□□□ -0.23
PTPRU-204ENST00000428026 MLLT11Q13015 90 aaPredicted RBP13.6□□□□□ -0.23
PTPRU-204ENST00000428026 ELAVL3Q14576 367 aaKnown RBP13.6□□□□□ -0.23
PTPRU-204ENST00000428026 GRM7Q14831 915 aa13.6□□□□□ -0.23
PTPRU-204ENST00000428026 PGM2L1Q6PCE3 622 aa13.6□□□□□ -0.23
PTPRU-204ENST00000428026 CHST14Q8NCH0 376 aa13.6□□□□□ -0.23
PTPRU-204ENST00000428026 BBS1Q8NFJ9 593 aa13.6□□□□□ -0.23
PTPRU-204ENST00000428026 OR5AR1Q8NGP9 310 aa13.6□□□□□ -0.23
PTPRU-204ENST00000428026 DUSP19Q8WTR2 217 aa13.6□□□□□ -0.23
PTPRU-204ENST00000428026 HLA-CQ95604 372 aa13.6□□□□□ -0.23
PTPRU-204ENST00000428026 OR2M2Q96R28 347 aa13.6□□□□□ -0.23
PTPRU-204ENST00000428026 DNTTIP1Q9H147 329 aa13.6□□□□□ -0.23
PTPRU-204ENST00000428026 V9GY05 133 aa13.6□□□□□ -0.23
PTPRU-204ENST00000428026 PTHP01270 115 aa13.6□□□□□ -0.23
PTPRU-204ENST00000428026 PXNP49023 591 aaPredicted RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms