RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 TSFMP43897 325 aaKnown RBP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 XCR1P46094 333 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 CCL11P51671 97 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 CCNG1P51959 295 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 MTTPP55157 894 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 PKNOX1P55347 436 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 DNAJB13P59910 316 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 RAB8AP61006 207 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 RPS3AP61247 264 aaKnown RBP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 BTN3A2P78410 334 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 MAT1AQ00266 395 aaKnown RBP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 ZNF33BQ06732 778 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 Q0VFX4 171 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 TRAF3Q13114 568 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 CUL3Q13618 768 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 GGTA1PQ4G0N0 100 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 DCAF10Q5QP82 559 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 ZNF678Q5SXM1 525 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 ATP1A1-AS1Q5TC04 95 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 KHDRBS2Q5VWX1 349 aaKnown RBP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 TTC19Q6DKK2 380 aaPredicted RBP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 TRIM40Q6P9F5 258 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 ZYG11AQ6WRX3 759 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 MEPCEQ7L2J0 689 aaKnown RBP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 NDUFAF7Q7L592 441 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 CPLX4Q7Z7G2 160 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 FJX1Q86VR8 437 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 METTL27Q8N6F8 245 aaPredicted RBP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 BANPQ8N9N5 519 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 WDR20Q8TBZ3 569 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 METTL21AQ8WXB1 218 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 PGM2Q96G03 612 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 PKNOX2Q96KN3 472 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 LYZL4Q96KX0 146 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 F2RL3Q96RI0 385 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 SERINC2Q96SA4 455 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 SMC6Q96SB8 1091 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 SERPINI1Q99574 410 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 MS4A8Q9BY19 250 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 IQCGQ9H095 443 aaKnown RBP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 ING2Q9H160 280 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 NMRK1Q9NWW6 199 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 AHSPQ9NZD4 102 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 C5AR2Q9P296 337 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 CTSFQ9UBX1 484 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 C19orf25Q9UFG5 118 aaPredicted RBP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 EMCNQ9ULC0 261 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 SNX6Q9UNH7 406 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 PLLPQ9Y342 182 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 RNF11Q9Y3C5 154 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 MMACHCQ9Y4U1 282 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 PCDHGB5Q9Y5G0 923 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 IGF2RP11717 2491 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 MAP1BP46821 2468 aaKnown RBP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 PCM1Q15154 2024 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 CEP295Q9C0D2 2601 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 USP34Q70CQ2 3546 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 FRYLO94915 3013 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 PTPRQQ9UMZ3 2332 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 MAGEB17A8MXT2 336 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 G3V2L1 256 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 PSMD12O00232 456 aaPredicted RBP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 CLDN4O14493 209 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 SOCS6O14544 535 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 ITM2AO43736 263 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 CTNSO60931 367 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 DNAJB6O75190 326 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 PTP4A3O75365 173 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 RDH16O75452 317 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 OR4F21O95013 312 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 SEMA3DO95025 777 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 TBX6O95947 436 aaPredicted RBP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 KRT6AP02538 564 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 KRT6BP04259 564 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 FHP07954 510 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 MYZAPP0CAP1 466 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 C8orf89P0DMQ9 161 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 T-ENOLP0DO92 83 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 SPTBP11277 2137 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 GNLYP22749 145 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 ATP5A1P25705 553 aaKnown RBP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 HNRNPH1P31943 449 aaKnown RBP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 KRT6CP48668 564 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 RAP1GDS1P52306 607 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 PLA2G16P53816 162 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 CDH13P55290 713 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 HSD17B7P56937 341 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 RAB38P57729 211 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 ARF1P84077 181 aaKnown RBP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 ACTN3Q08043 901 aaPredicted RBP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 CRYZQ08257 329 aaKnown RBP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 IFT88Q13099 833 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 AIMP2Q13155 320 aaKnown RBP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 BIKQ13323 160 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 DCTN2Q13561 401 aaKnown RBP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 RUNX2Q13950 521 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 SYT16Q17RD7 645 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 KRT71Q3SY84 523 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 TNFAIP8L3Q5GJ75 292 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms