RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 HOXB13Q92826 284 aaPredicted RBP7.75□□□□□ -1.17
USP54-203ENST00000418501 KIAA1143Q96AT1 154 aaPredicted RBP7.75□□□□□ -1.17
USP54-203ENST00000418501 NIPSNAP1Q9BPW8 284 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 WWTR1Q9GZV5 400 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 SLC26A1Q9H2B4 701 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 SEMA4GQ9NTN9 838 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 TMEM74BQ9NUR3 256 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 KLRF1Q9NZS2 232 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 CCDC187A0A096LP49 1063 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 A0A1B0GWA3 101 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 XKRYO14609 159 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 MMP11P24347 488 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 FBXW4P57775 412 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 ST3GAL4Q11206 333 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 RAB39AQ14964 217 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 TIGD6Q17RP2 521 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 SLC25A30Q5SVS4 291 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 PLAG1Q6DJT9 500 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 MAMDC2Q7Z304 686 aaPredicted RBP7.75□□□□□ -1.17
USP54-203ENST00000418501 CEP19Q96LK0 163 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 SSR3Q9UNL2 185 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 PTRH2Q9Y3E5 179 aaKnown RBP7.75□□□□□ -1.17
USP54-203ENST00000418501 PCDHGA1Q9Y5H4 931 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 IGLV3-12A0A075B6K2 115 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 OR6C70A6NIJ9 312 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 SOX14O95416 240 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 PDGFBP01127 241 aaPredicted RBP7.74□□□□□ -1.17
USP54-203ENST00000418501 CT62P0C5K7 136 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 PSG6Q00889 435 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 RHAGQ02094 409 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 SHBQ15464 509 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 TRAM1Q15629 374 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 C12orf73Q69YU5 71 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 GPR139Q6DWJ6 353 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 FAAH2Q6GMR7 532 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 DNM1P34Q6PK57 102 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 C6orf15Q6UXA7 325 aaPredicted RBP7.74□□□□□ -1.17
USP54-203ENST00000418501 WDR53Q7Z5U6 358 aaPredicted RBP7.74□□□□□ -1.17
USP54-203ENST00000418501 CLIP4Q8N3C7 705 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 TMEM52Q8NDY8 209 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 FBLIM1Q8WUP2 373 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 NACC2Q96BF6 587 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 OMA1Q96E52 524 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 QRSL1Q9H0R6 528 aaKnown RBP7.74□□□□□ -1.17
USP54-203ENST00000418501 PPP4R1LQ9P1A2 415 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 CRNNQ9UBG3 495 aaPredicted RBP7.74□□□□□ -1.17
USP54-203ENST00000418501 TRBV11-1A0A0K0K1C0 115 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 DLGAP1O14490 977 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 GALR2O43603 387 aaPredicted RBP7.74□□□□□ -1.17
USP54-203ENST00000418501 LRP3O75074 770 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 ONECUT2O95948 504 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 MT-ATP6P00846 226 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 POLR2HP52434 150 aaKnown RBP7.74□□□□□ -1.17
USP54-203ENST00000418501 SLC37A1P57057 533 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 TMPRSS11FQ6ZWK6 438 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 ANKRD37Q7Z713 158 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 ZNF615Q8N8J6 731 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 OR4K17Q8NGC6 315 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 TSLPQ969D9 159 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 MUL1Q969V5 352 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 ADOQ96SZ5 270 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 TMEM43Q9BTV4 400 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 OCEL1Q9H607 264 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 ERVK-18Q9QC07 812 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 TNFRSF10DQ9UBN6 386 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 IGKV3D-11A0A0A0MRZ8 115 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 PNMA8CA0A1B0GUJ8 204 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 AKAP8O43823 692 aaKnown RBP7.74□□□□□ -1.17
USP54-203ENST00000418501 MT-ND2P03891 347 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 HSMCR30P0CW71 290 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 CTBP2P56545 445 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 CRYZQ08257 329 aaKnown RBP7.74□□□□□ -1.17
USP54-203ENST00000418501 MED22Q15528 200 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 EXOSC6Q5RKV6 272 aaKnown RBP7.74□□□□□ -1.17
USP54-203ENST00000418501 USP43Q70EL4 1123 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 CXXC5Q7LFL8 322 aaKnown RBP7.74□□□□□ -1.17
USP54-203ENST00000418501 LAPTM4BQ86VI4 370 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 TMEM105Q8N8V8 129 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 OR5W2Q8NH69 310 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 MOSPD2Q8NHP6 518 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 PTPMT1Q8WUK0 201 aaPredicted RBP7.74□□□□□ -1.17
USP54-203ENST00000418501 COQ7Q99807 217 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 RXFP3Q9NSD7 469 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 SACM1LQ9NTJ5 587 aa7.74□□□□□ -1.17
USP54-203ENST00000418501 SIDT1Q9NXL6 827 aaKnown RBP7.74□□□□□ -1.17
USP54-203ENST00000418501 A0A0B4J2E0 115 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 A0A1B0GX12 115 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 P2RX1P51575 399 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 SLC35A2P78381 396 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 FUT5Q11128 374 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 MRPL28Q13084 256 aaKnown RBP7.73□□□□□ -1.17
USP54-203ENST00000418501 LPAL2Q16609 132 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 VWA2Q5GFL6 755 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 TMEM201Q5SNT2 666 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 KANSL1Q7Z3B3 1105 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 ZER1Q7Z7L7 766 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 TMEM156Q8N614 296 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 APOBEC4Q8WW27 367 aaKnown RBP7.73□□□□□ -1.17
USP54-203ENST00000418501 ST8SIA1Q92185 356 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 CNOT9Q92600 299 aaKnown RBP7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms