RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 TNFAIP8L3Q5GJ75 292 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 DCAF10Q5QP82 559 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 LCN10Q6JVE6 187 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 TMIGD1Q6UXZ0 262 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 Q6ZTK2 550 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 LRRC70Q7Z2Q7 622 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 PLD3Q8IV08 490 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 CEP97Q8IW35 865 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 FOXRED2Q8IWF2 684 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 RND1Q92730 232 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 EXT2Q93063 718 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 NEIL2Q969S2 332 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 RHBDF1Q96CC6 855 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 EFCAB11Q9BUY7 163 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 ROGDIQ9GZN7 287 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 PLK3Q9H4B4 646 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 COPS7BQ9H9Q2 264 aaPredicted RBP5.84□□□□□ -1.48
USP40-202ENST00000409945 PLAC1Q9HBJ0 212 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 NINJ2Q9NZG7 142 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 OPTCQ9UBM4 332 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 TEKT2Q9UIF3 430 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 MRPS33Q9Y291 106 aaKnown RBP5.84□□□□□ -1.48
USP40-202ENST00000409945 TP53TG5Q9Y2B4 290 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 SLC22A7Q9Y694 548 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 SPACA6W5XKT8 324 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 A0A0A6YYC8 382 aaPredicted RBP5.83□□□□□ -1.48
USP40-202ENST00000409945 NSG1A0A0A6YYJ2 146 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 IQANK1A0A1B0GTG1 560 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 FEZF1A0PJY2 475 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 GMNCA6NCL1 334 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 I3L1I5 382 aaPredicted RBP5.83□□□□□ -1.48
USP40-202ENST00000409945 KERAO60938 352 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 C1GALT1C1LP0DN25 315 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 SELLP14151 372 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 CD1DP15813 335 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 IRF8Q02556 426 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 KLC1Q07866 573 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 ACTN3Q08043 901 aaPredicted RBP5.83□□□□□ -1.48
USP40-202ENST00000409945 PTGR1Q14914 329 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 XKR6Q5GH73 641 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 AGAP7PQ5VUJ5 663 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 DCAF12L2Q5VW00 463 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 TTC19Q6DKK2 380 aaPredicted RBP5.83□□□□□ -1.48
USP40-202ENST00000409945 PRSS58Q8IYP2 241 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 SAMD14Q8IZD0 417 aaPredicted RBP5.83□□□□□ -1.48
USP40-202ENST00000409945 ZADH2Q8N4Q0 377 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 OR4K1Q8NGD4 311 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 RHEBL1Q8TAI7 183 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 ANKRD49Q8WVL7 239 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 MTBPQ96DY7 904 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 AGAP4Q96P64 663 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 OR1F2PQ96R84 312 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 ABHD1Q96SE0 405 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 CCT8L2Q96SF2 557 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 FAM110AQ9BQ89 295 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 EHD1Q9H4M9 534 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 ALG9Q9H6U8 611 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 CTSFQ9UBX1 484 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 TBK1Q9UHD2 729 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 LGALS13Q9UHV8 139 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 RRP15Q9Y3B9 282 aaKnown RBP5.83□□□□□ -1.48
USP40-202ENST00000409945 ANKRD12Q6UB98 2062 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 HEATR5BQ9P2D3 2071 aa5.83□□□□□ -1.48
USP40-202ENST00000409945 LOC400499M0QZD8 3231 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 IGLV3-12A0A075B6K2 115 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 VSTM2BA6NLU5 285 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 A8MV72 311 aaPredicted RBP5.82□□□□□ -1.48
USP40-202ENST00000409945 IDSB3KWA1 339 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 PIAS1O75925 651 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 TPPPO94811 219 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 KLHL2O95198 593 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 HPP00738 406 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 C2P06681 752 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 SERPINA6P08185 405 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 SNRPAP09012 282 aaKnown RBP5.82□□□□□ -1.48
USP40-202ENST00000409945 C8orf89P0DMQ9 161 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 TAC1P20366 129 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 XCR1P46094 333 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 REEP5Q00765 189 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 IFT88Q13099 833 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 CHAF1BQ13112 559 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 RASA2Q15283 850 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 METTL2BQ6P1Q9 378 aaKnown RBP5.82□□□□□ -1.48
USP40-202ENST00000409945 TRIM40Q6P9F5 258 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 C16orf87Q6PH81 154 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 TMEM207Q6UWW9 146 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 SHISA6Q6ZSJ9 500 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 NDUFAF7Q7L592 441 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 OR9A4Q8NGU2 314 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 OR51Q1Q8NH59 317 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 NT5CQ8TCD5 201 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 ZNF473Q8WTR7 871 aaKnown RBP5.82□□□□□ -1.48
USP40-202ENST00000409945 ATP6V1E2Q96A05 226 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 TM4SF19Q96DZ7 209 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 CHMP6Q96FZ7 201 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 C10orf90Q96M02 699 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 PAFAH2Q99487 392 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 SLC29A3Q9BZD2 475 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 NT5DC2Q9H857 520 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 INTS9Q9NV88 658 aaKnown RBP5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms