RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 ILKQ13418 452 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 TMEM107Q6UX40 140 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 B3GLCTQ6Y288 498 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 C19orf35Q6ZS72 473 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 DTWD1Q8N5C7 304 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 GLIS1Q8NBF1 620 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 OR14A16Q8NHC5 309 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 UCN3Q969E3 161 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 ISL2Q96A47 359 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 MED30Q96HR3 178 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 ZNF681Q96N22 645 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 ARPC5LQ9BPX5 153 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 ZNF160Q9HCG1 818 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 TREX1Q9NSU2 369 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 ASF1BQ9NVP2 202 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 KCTD3Q9Y597 815 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 WIF1Q9Y5W5 379 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 KPTNQ9Y664 436 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 MRPL42Q9Y6G3 142 aaKnown RBP5.74□□□□□ -1.49
SCN1A-203ENST00000409050 CAMTA1Q9Y6Y1 1673 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 UBR1Q8IWV7 1749 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 FMN2Q9NZ56 1722 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 A0A087WUU8 490 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 H0YIV9 168 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 RGS11O94810 467 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 TBX18O95935 607 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 SCG5P05408 212 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 PSMB1P20618 241 aaKnown RBP5.74□□□□□ -1.49
SCN1A-203ENST00000409050 HOXD13P35453 343 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 ETV1P50549 477 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 RABGGTBP53611 331 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 CDKN2DP55273 166 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 YPEL5P62699 121 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 IL13RA1P78552 427 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 EIF2B1Q14232 305 aaKnown RBP5.74□□□□□ -1.49
SCN1A-203ENST00000409050 FGFBP1Q14512 234 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 OR4D1Q15615 310 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 FAM122BQ7Z309 247 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 KRTCAP2Q8N6L1 136 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 ZNF366Q8N895 744 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 NAT6Q93015 286 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 DAZAP1Q96EP5 407 aaKnown RBP5.74□□□□□ -1.49
SCN1A-203ENST00000409050 SLC30A3Q99726 388 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 SSX3Q99909 188 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 WDR77Q9BQA1 342 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-203ENST00000409050 FZD3Q9NPG1 666 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 PLEKHJ1Q9NW61 149 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 ALKBH4Q9NXW9 302 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 FBXL3Q9UKT7 428 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 MMACHCQ9Y4U1 282 aa5.74□□□□□ -1.49
SCN1A-203ENST00000409050 PRAMEF26H0Y7S4 382 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 LALBAP00709 142 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 IGHG1P01857 330 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 RAF1P04049 648 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 MRPL3P09001 348 aaKnown RBP5.73□□□□□ -1.49
SCN1A-203ENST00000409050 C6P13671 934 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 ELK1P19419 428 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 FUT1P19526 365 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 MSX1P28360 303 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 SNTB1Q13884 538 aaKnown RBP5.73□□□□□ -1.49
SCN1A-203ENST00000409050 GRIN2CQ14957 1233 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 CST6Q15828 149 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 YIF1BQ5BJH7 314 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 NXNL2Q5VZ03 156 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 MTFR2Q6P444 385 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 GALNT11Q8NCW6 608 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 TMEM185AQ8NFB2 350 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 KCNJ15Q99712 375 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 NKX3-1Q99801 234 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-203ENST00000409050 QRSL1Q9H0R6 528 aaKnown RBP5.73□□□□□ -1.49
SCN1A-203ENST00000409050 PIGMQ9H3S5 423 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 LIN28AQ9H9Z2 209 aaKnown RBP5.73□□□□□ -1.49
SCN1A-203ENST00000409050 SLC6A20Q9NP91 592 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 UBQLN4Q9NRR5 601 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 LOC102723532A0A0G2JNH3 316 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 TRDV1A0A1B0GX56 115 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 A8MVM7 634 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 ARHGAP33O14559 1287 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 KHNYNO15037 678 aaKnown RBP5.73□□□□□ -1.49
SCN1A-203ENST00000409050 CFIP05156 583 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 DCNP07585 359 aaKnown RBP5.73□□□□□ -1.49
SCN1A-203ENST00000409050 C8orf89P0DMQ9 161 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 BMP4P12644 408 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 ELNP15502 786 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 CD1EP15812 388 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 PRPH2P23942 346 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 HOXD12P35452 270 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 DDOSTP39656 456 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 SNRPGP62308 76 aaKnown RBP5.73□□□□□ -1.49
SCN1A-203ENST00000409050 RAB1AP62820 205 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 P2RY14Q15391 338 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 ZNF585AQ6P3V2 769 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 COMTD1Q86VU5 262 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 PRSS58Q8IYP2 241 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 TMEM151AQ8N4L1 468 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 SYNPRQ8TBG9 265 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 F2RL3Q96RI0 385 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 UHRF1Q96T88 793 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-203ENST00000409050 CHRDL1Q9BU40 450 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 MOB1AQ9H8S9 216 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms