RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 MAP4K2Q12851 820 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 SELPLGQ14242 412 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 TRIM25Q14258 630 aaKnown RBP9.37□□□□□ -0.91
NEDD8-202ENST00000396828 DAZAP2Q15038 168 aaPredicted RBP9.37□□□□□ -0.91
NEDD8-202ENST00000396828 TOMM20Q15388 145 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 TRMT12Q53H54 448 aaKnown RBP9.37□□□□□ -0.91
NEDD8-202ENST00000396828 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.37□□□□□ -0.91
NEDD8-202ENST00000396828 C1orf146Q5VVC0 180 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 HLA-DQA1Q5Y7H0 255 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 TIGD3Q6B0B8 471 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 ERICH5Q6P6B1 374 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 NET1Q7Z628 596 aaPredicted RBP9.37□□□□□ -0.91
NEDD8-202ENST00000396828 PACS2Q86VP3 889 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 RNF130Q86XS8 419 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 OR2L13Q8N349 312 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 VWA5B2Q8N398 1253 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 WDSUB1Q8N9V3 476 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 NUP43Q8NFH3 380 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 OR7G2Q8NG99 324 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 MBD3L2Q8NHZ7 208 aaPredicted RBP9.37□□□□□ -0.91
NEDD8-202ENST00000396828 FAM222BQ8WU58 562 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 ABTB1Q969K4 478 aaPredicted RBP9.37□□□□□ -0.91
NEDD8-202ENST00000396828 UTP4Q969X6 686 aaKnown RBP9.37□□□□□ -0.91
NEDD8-202ENST00000396828 ASB9Q96DX5 294 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 TMEM41AQ96HV5 264 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 REXO5Q96IC2 774 aaKnown RBP9.37□□□□□ -0.91
NEDD8-202ENST00000396828 SLC35G5Q96KT7 338 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 SMR3AQ99954 134 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 G6PC3Q9BUM1 346 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 IKZF5Q9H5V7 419 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 PIF1Q9H611 641 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 PLEKHF2Q9H8W4 249 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 MAT2BQ9NZL9 334 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 JKAMPQ9P055 326 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 NTMQ9P121 344 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 CD300AQ9UGN4 299 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 SLC7A8Q9UHI5 535 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 ZNF639Q9UID6 485 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 PACSIN3Q9UKS6 424 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 FAF1Q9UNN5 650 aaPredicted RBP9.37□□□□□ -0.91
NEDD8-202ENST00000396828 C19orf53Q9UNZ5 99 aaPredicted RBP9.37□□□□□ -0.91
NEDD8-202ENST00000396828 RPH3AQ9Y2J0 694 aaPredicted RBP9.37□□□□□ -0.91
NEDD8-202ENST00000396828 MED12LQ86YW9 2145 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 ANK3Q12955 4377 aaKnown RBP9.36□□□□□ -0.91
NEDD8-202ENST00000396828 ELOVL7A1L3X0 281 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 CD8B2A6NJW9 211 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 DUXAA6NLW8 204 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 UPK1AO00322 258 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 UGT2B11O75310 529 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 SOX30O94993 753 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 ATE1O95260 518 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 CBX7O95931 251 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 IL2RAP01589 272 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 HMGN2P05204 90 aaKnown RBP9.36□□□□□ -0.91
NEDD8-202ENST00000396828 EPXP11678 715 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 MATN1P21941 496 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 DNASE1P24855 282 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 STARP49675 285 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 TRAP1Q12931 704 aaKnown RBP9.36□□□□□ -0.91
NEDD8-202ENST00000396828 FLOT2Q14254 428 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 POU4F3Q15319 338 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 GCNT6Q5T4J0 391 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 PAMR1Q6UXH9 720 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 KRTAP1-3Q8IUG1 177 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 C10orf67Q8IYJ2 551 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 FAM156AQ8NDB6 213 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 WFDC11Q8NEX6 87 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 OR7G1Q8NGA0 311 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 OR1J4Q8NGS1 313 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 CTHRC1Q96CG8 243 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 OMA1Q96E52 524 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 LRGUKQ96M69 825 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 ZNF583Q96ND8 569 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 SECISBP2Q96T21 854 aaKnown RBP9.36□□□□□ -0.91
NEDD8-202ENST00000396828 TUBA1CQ9BQE3 449 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 ACTRT3Q9BYD9 372 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 TRIM15Q9C019 465 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 OCEL1Q9H607 264 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 MAGEL2Q9UJ55 1249 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 POMPQ9Y244 141 aa9.36□□□□□ -0.91
NEDD8-202ENST00000396828 TUBAL3A6NHL2 446 aa9.35□□□□□ -0.91
NEDD8-202ENST00000396828 EEF1E1-BLOC1S5C9J1V9 151 aa9.35□□□□□ -0.91
NEDD8-202ENST00000396828 SNPHO15079 494 aa9.35□□□□□ -0.91
NEDD8-202ENST00000396828 EEF1E1O43324 174 aaKnown RBP9.35□□□□□ -0.91
NEDD8-202ENST00000396828 AGR2O95994 175 aa9.35□□□□□ -0.91
NEDD8-202ENST00000396828 ETFAP13804 333 aa9.35□□□□□ -0.91
NEDD8-202ENST00000396828 TCEA1P23193 301 aaKnown RBP9.35□□□□□ -0.91
NEDD8-202ENST00000396828 CTSSP25774 331 aa9.35□□□□□ -0.91
NEDD8-202ENST00000396828 MSX2P35548 267 aaPredicted RBP9.35□□□□□ -0.91
NEDD8-202ENST00000396828 EMDP50402 254 aa9.35□□□□□ -0.91
NEDD8-202ENST00000396828 CASP9P55211 416 aa9.35□□□□□ -0.91
NEDD8-202ENST00000396828 NRG3P56975 720 aa9.35□□□□□ -0.91
NEDD8-202ENST00000396828 DSTNP60981 165 aa9.35□□□□□ -0.91
NEDD8-202ENST00000396828 RPS26P62854 115 aaKnown RBP9.35□□□□□ -0.91
NEDD8-202ENST00000396828 SRYQ05066 204 aa9.35□□□□□ -0.91
NEDD8-202ENST00000396828 RBBP4Q09028 425 aa9.35□□□□□ -0.91
NEDD8-202ENST00000396828 GNA13Q14344 377 aa9.35□□□□□ -0.91
NEDD8-202ENST00000396828 LASP1Q14847 261 aaKnown RBP9.35□□□□□ -0.91
NEDD8-202ENST00000396828 ZNHIT3Q15649 155 aaPredicted RBP9.35□□□□□ -0.91
NEDD8-202ENST00000396828 VMACQ2NL98 169 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms