RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 KCTD7Q96MP8 289 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 TBX5Q99593 518 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 ISYNA1Q9NPH2 558 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 PRDM9Q9NQV7 894 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 GPR27Q9NS67 375 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 GON4LQ3T8J9 2241 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 CHST10O43529 356 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 CELP19835 753 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 RAB30Q15771 203 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 NIPAL3Q6P499 406 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 ZNF322Q6U7Q0 402 aaPredicted RBP12.37□□□□□ -0.43
CCDC3-202ENST00000378839 CLDN22Q8N7P3 220 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 FANK1Q8TC84 345 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 RLN3Q8WXF3 142 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 NACC2Q96BF6 587 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 STACQ99469 402 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 MN1Q10571 1320 aaPredicted RBP12.37□□□□□ -0.43
CCDC3-202ENST00000378839 A0A0A6YYC8 382 aaPredicted RBP12.37□□□□□ -0.43
CCDC3-202ENST00000378839 A0A1W2PQ09 198 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 CD8B2A6NJW9 211 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 E9PI62 339 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 PRAMEF26H0Y7S4 382 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 I3L1I5 382 aaPredicted RBP12.37□□□□□ -0.43
CCDC3-202ENST00000378839 CD8BP10966 210 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 IL7P13232 177 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 CASP3P42574 277 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 RABIFP47224 123 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 HHEXQ03014 270 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 TAB1Q15750 504 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 RANBP3LQ86VV4 465 aaPredicted RBP12.37□□□□□ -0.43
CCDC3-202ENST00000378839 CAMKK1Q8N5S9 505 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 ART5Q96L15 291 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 HS6ST2Q96MM7 605 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 DDX28Q9NUL7 540 aaKnown RBP12.37□□□□□ -0.43
CCDC3-202ENST00000378839 HCN3Q9P1Z3 774 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 CLCA2Q9UQC9 943 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 SIGLEC7Q9Y286 467 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 ENTPD2Q9Y5L3 495 aa12.37□□□□□ -0.43
CCDC3-202ENST00000378839 SYNDIG1LA6NDD5 238 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 CCDC182A6NF36 153 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 THEGLP0DJG4 465 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 DRD5P21918 477 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 FGF9P31371 208 aaPredicted RBP12.36□□□□□ -0.43
CCDC3-202ENST00000378839 ACAA2P42765 397 aaKnown RBP12.36□□□□□ -0.43
CCDC3-202ENST00000378839 SLC9A3P48764 834 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 MAZP56270 477 aaKnown RBP12.36□□□□□ -0.43
CCDC3-202ENST00000378839 BTG2P78543 158 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 NDUFAF6Q330K2 333 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 EIPR1Q53HC9 387 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 NPSR1Q6W5P4 371 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 MED18Q9BUE0 208 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 MED17Q9NVC6 651 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 SLC30A4O14863 429 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 PTP4A3O75365 173 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 REM1O75628 298 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 NKX2-2O95096 273 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 CSF3P09919 207 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 COPZ1P61923 177 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 GATAD2AQ86YP4 633 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 DEFB119Q8N690 84 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 OR51A7Q8NH64 312 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 BPIFA2Q96DR5 249 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 DMRTB1Q96MA1 342 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 LRRC61Q9BV99 259 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 GPR174Q9BXC1 333 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 RNF32Q9H0A6 362 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 TRPV5Q9NQA5 729 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 POMT2Q9UKY4 750 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 NDRG2Q9UN36 371 aaKnown RBP12.36□□□□□ -0.43
CCDC3-202ENST00000378839 TMEM184BQ9Y519 407 aaPredicted RBP12.36□□□□□ -0.43
CCDC3-202ENST00000378839 TRDV1A0A1B0GX56 115 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 SLC9B1P1A6NJY1 282 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 B4DGG1 531 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 GABRPO00591 440 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 ZNF10P21506 573 aaPredicted RBP12.36□□□□□ -0.43
CCDC3-202ENST00000378839 IFNA8P32881 189 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 RAB38P57729 211 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 POU6F2P78424 691 aaPredicted RBP12.36□□□□□ -0.43
CCDC3-202ENST00000378839 KIAA0895LQ68EN5 471 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 VWA5B2Q8N398 1253 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 LNX2Q8N448 690 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 RFLNBQ8N5W9 214 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 RFKQ969G6 155 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 DNAJB12Q9NXW2 375 aaKnown RBP12.36□□□□□ -0.43
CCDC3-202ENST00000378839 TNFRSF10DQ9UBN6 386 aa12.36□□□□□ -0.43
CCDC3-202ENST00000378839 SNTNA6NMZ2 147 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 C12orf71A8MTZ7 269 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 ATXN8OSP0DMR3 200 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 FOXK2Q01167 660 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 DSG2Q14126 1118 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 NNATQ16517 81 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 GARNL3Q5VVW2 1013 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 TMPRSS11FQ6ZWK6 438 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 SLC37A3Q8NCC5 494 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 SPACA7Q96KW9 195 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 CD180Q99467 661 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 ATF6BQ99941 703 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 GSDMCQ9BYG8 508 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 TP63Q9H3D4 680 aaPredicted RBP12.35□□□□□ -0.43
CCDC3-202ENST00000378839 A0A0B4J2E0 115 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms