RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 RIT2Q99578 217 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 SLC6A7Q99884 636 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 IKZF5Q9H5V7 419 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 GORASP2Q9H8Y8 452 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 PLSCR3Q9NRY6 295 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 PAK1IP1Q9NWT1 392 aaPredicted RBP1.54□□□□□ -2.16
VPS13A-206ENST00000376646 LCMT1Q9UIC8 334 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 MRPS33Q9Y291 106 aaKnown RBP1.54□□□□□ -2.16
VPS13A-206ENST00000376646 WDR45Q9Y484 360 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 PPIAL4AQ9Y536 164 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 ANKRD30BQ9BXX2 1392 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 KIF16BQ96L93 1317 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 KLF18A0A0U1RQI7 1052 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 FAM220BPB1ANY3 271 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 GPR89AB7ZAQ6 455 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 CDX4O14627 284 aaPredicted RBP1.53□□□□□ -2.16
VPS13A-206ENST00000376646 MAGEB3O15480 346 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 MTX2O75431 263 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 ZNF254O75437 659 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 ALOX5P09917 674 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 GPR89BP0CG08 455 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 PDHBP11177 359 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 PGCP20142 388 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 TBXA2RP21731 343 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 OTX2P32243 289 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 HPCAL1P37235 193 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 MDH2P40926 338 aaKnown RBP1.53□□□□□ -2.16
VPS13A-206ENST00000376646 DHPSP49366 369 aaPredicted RBP1.53□□□□□ -2.16
VPS13A-206ENST00000376646 OTUD4Q01804 1114 aaKnown RBP1.53□□□□□ -2.16
VPS13A-206ENST00000376646 CD47Q08722 323 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 MXD4Q14582 209 aaPredicted RBP1.53□□□□□ -2.16
VPS13A-206ENST00000376646 GSG1Q2KHT4 349 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 C2orf83Q53S99 150 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 C10orf120Q5SQS8 335 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 UTF1Q5T230 341 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 ATF7IP2Q5U623 682 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 TTC23Q5W5X9 447 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 PAMR1Q6UXH9 720 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 C2orf66Q6UXQ4 117 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 RGS9BPQ6ZS82 235 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 VASH2Q86V25 355 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 SERPINA9Q86WD7 417 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 GPR65Q8IYL9 337 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 STXBP6Q8NFX7 210 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 AENQ8WTP8 325 aaKnown RBP1.53□□□□□ -2.16
VPS13A-206ENST00000376646 IL1F10Q8WWZ1 152 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 PSMG2Q969U7 264 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 PHYHIPLQ96FC7 376 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 VSIG2Q96IQ7 327 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 C12orf66Q96MD2 445 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 NOL4LQ96MY1 436 aaPredicted RBP1.53□□□□□ -2.16
VPS13A-206ENST00000376646 ZNF285Q96NJ3 590 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 OR5B2Q96R09 309 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 CRACR2AQ9BSW2 395 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 EDEM2Q9BV94 578 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 CRNKL1Q9BZJ0 848 aaKnown RBP1.53□□□□□ -2.16
VPS13A-206ENST00000376646 POLR1EQ9GZS1 481 aaKnown RBP1.53□□□□□ -2.16
VPS13A-206ENST00000376646 NXF5Q9H1B4 397 aaKnown RBP1.53□□□□□ -2.16
VPS13A-206ENST00000376646 CAB39LQ9H9S4 337 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 RAB18Q9NP72 206 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 DPM3Q9P2X0 92 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 RNF14Q9UBS8 474 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 TBK1Q9UHD2 729 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 ALG6Q9Y672 507 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 MAD1L1Q9Y6D9 718 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 KDRP35968 1356 aa1.53□□□□□ -2.16
VPS13A-206ENST00000376646 FRMPD4Q14CM0 1322 aa1.53□□□□□ -2.17
VPS13A-206ENST00000376646 ATAD2BQ9ULI0 1458 aa1.53□□□□□ -2.17
VPS13A-206ENST00000376646 HSFX4A0A1B0GTS1 333 aaPredicted RBP1.52□□□□□ -2.17
VPS13A-206ENST00000376646 HSFX3A0A1B0GWH4 333 aaPredicted RBP1.52□□□□□ -2.17
VPS13A-206ENST00000376646 H0Y9J4 135 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 NUDT21O43809 227 aaKnown RBP1.52□□□□□ -2.17
VPS13A-206ENST00000376646 GPX5O75715 221 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 SERPINA2P20848 420 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 CALB2P22676 271 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 RIPPLY1Q0D2K3 151 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 CUL1Q13616 776 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 NDUFA9Q16795 377 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 TIGITQ495A1 244 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 OR51G2Q8NGK0 314 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 OR52M1Q8NGK5 317 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 OR5L2Q8NGL0 311 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 FAM3CQ92520 227 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 SH3YL1Q96HL8 342 aaPredicted RBP1.52□□□□□ -2.17
VPS13A-206ENST00000376646 MS4A14Q96JA4 679 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 AMDHD1Q96NU7 426 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 SIGLEC12Q96PQ1 595 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 CYP2S1Q96SQ9 504 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 OMDQ99983 421 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 DPH7Q9BTV6 452 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 DUSP16Q9BY84 665 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 SMPD3Q9NY59 655 aaPredicted RBP1.52□□□□□ -2.17
VPS13A-206ENST00000376646 ZNF221Q9UK13 617 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 SAMD4AQ9UPU9 718 aaKnown RBP1.52□□□□□ -2.17
VPS13A-206ENST00000376646 MRPS7Q9Y2R9 242 aaKnown RBP1.52□□□□□ -2.17
VPS13A-206ENST00000376646 OARD1Q9Y530 152 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 USP16Q9Y5T5 823 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 MBLAC1A4D2B0 266 aaPredicted RBP1.52□□□□□ -2.17
VPS13A-206ENST00000376646 METTL21EPA6NDL7 271 aa1.52□□□□□ -2.17
VPS13A-206ENST00000376646 G3V4G9 280 aa1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms