RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 MLC1Q15049 377 aa20.8■□□□□ 0.92
TRIM28-202ENST00000341753 NRSN1Q8IZ57 195 aa20.8■□□□□ 0.92
TRIM28-202ENST00000341753 PELI2Q9HAT8 420 aa20.8■□□□□ 0.92
TRIM28-202ENST00000341753 IL23AQ9NPF7 189 aa20.8■□□□□ 0.92
TRIM28-202ENST00000341753 GNA13Q14344 377 aa20.8■□□□□ 0.92
TRIM28-202ENST00000341753 HMGB4Q8WW32 186 aa20.8■□□□□ 0.92
TRIM28-202ENST00000341753 ADAMTS14Q8WXS8 1223 aa20.8■□□□□ 0.92
TRIM28-202ENST00000341753 OR52D1Q9H346 318 aa20.8■□□□□ 0.92
TRIM28-202ENST00000341753 C12orf10Q9HB07 376 aa20.8■□□□□ 0.92
TRIM28-202ENST00000341753 FBXL4Q9UKA2 621 aa20.8■□□□□ 0.92
TRIM28-202ENST00000341753 ZMIZ1Q9ULJ6 1067 aa20.8■□□□□ 0.92
TRIM28-202ENST00000341753 HEATR5BQ9P2D3 2071 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 LOC105378220A0A1B0GUY1 285 aaPredicted RBP20.79■□□□□ 0.92
TRIM28-202ENST00000341753 A0A1W2PPV9 198 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 ERI3O43414 337 aaKnown RBP20.79■□□□□ 0.92
TRIM28-202ENST00000341753 KLF4O43474 513 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 ATF1P18846 271 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 RAB14P61106 215 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 DECR1Q16698 335 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 TMEM44Q2T9K0 475 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 CCNJQ5T5M9 372 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 MBOAT2Q6ZWT7 520 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 MEPCEQ7L2J0 689 aaKnown RBP20.79■□□□□ 0.92
TRIM28-202ENST00000341753 NLRC3Q7RTR2 1065 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 IQCF2Q8IXL9 164 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 LINC01555Q8NAE3 123 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 NUP43Q8NFH3 380 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 DOK4Q8TEW6 326 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 BADQ92934 168 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 BRD7Q9NPI1 651 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 WASH6PQ9NQA3 447 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 CENPVL1A0A0U1RR11 272 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 G3V3Q6 166 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 GYPBP06028 91 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 RRASP10301 218 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 FXYD6P3P58550 94 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 CSNK1G2P78368 415 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 FNDC3BQ53EP0 1204 aaKnown RBP20.79■□□□□ 0.92
TRIM28-202ENST00000341753 ACSM3Q53FZ2 586 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 CYB561A3Q8NBI2 242 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 PFN4Q8NHR9 129 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 HGDQ93099 445 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 KCTD12Q96CX2 325 aaKnown RBP20.79■□□□□ 0.92
TRIM28-202ENST00000341753 DDOQ99489 341 aa20.79■□□□□ 0.92
TRIM28-202ENST00000341753 LRRK1Q38SD2 2015 aa20.78■□□□□ 0.92
TRIM28-202ENST00000341753 LRIT2A6NDA9 550 aa20.78■□□□□ 0.92
TRIM28-202ENST00000341753 M0R233 179 aa20.78■□□□□ 0.92
TRIM28-202ENST00000341753 SLC9A3R1O14745 358 aaPredicted RBP20.78■□□□□ 0.92
TRIM28-202ENST00000341753 NOS3P29474 1203 aa20.78■□□□□ 0.92
TRIM28-202ENST00000341753 HCCSP53701 268 aa20.78■□□□□ 0.92
TRIM28-202ENST00000341753 ST8SIA6P61647 398 aa20.78■□□□□ 0.92
TRIM28-202ENST00000341753 SNTB2Q13425 540 aaKnown RBP20.78■□□□□ 0.92
TRIM28-202ENST00000341753 Q6ZTK2 550 aa20.78■□□□□ 0.92
TRIM28-202ENST00000341753 RFLNBQ8N5W9 214 aa20.78■□□□□ 0.92
TRIM28-202ENST00000341753 OR5J2Q8NH18 312 aa20.78■□□□□ 0.92
TRIM28-202ENST00000341753 RPLP0P6Q8NHW5 317 aa20.78■□□□□ 0.92
TRIM28-202ENST00000341753 RIT1Q92963 219 aa20.78■□□□□ 0.92
TRIM28-202ENST00000341753 MED17Q9NVC6 651 aa20.78■□□□□ 0.92
TRIM28-202ENST00000341753 SPATA2Q9UM82 520 aa20.78■□□□□ 0.92
TRIM28-202ENST00000341753 CXorf51AA0A1B0GTR3 108 aa20.78■□□□□ 0.92
TRIM28-202ENST00000341753 HMGN1P05114 100 aa20.78■□□□□ 0.92
TRIM28-202ENST00000341753 DRD2P14416 443 aa20.78■□□□□ 0.92
TRIM28-202ENST00000341753 GALP22466 123 aa20.78■□□□□ 0.92
TRIM28-202ENST00000341753 DDX6P26196 483 aaKnown RBP eCLIP20.78■□□□□ 0.928e-9■■□□□ 13.5
TRIM28-202ENST00000341753 AMZ2Q86W34 360 aa20.78■□□□□ 0.92
TRIM28-202ENST00000341753 KISS1RQ969F8 398 aaPredicted RBP20.78■□□□□ 0.92
TRIM28-202ENST00000341753 FAIM2Q9BWQ8 316 aa20.78■□□□□ 0.92
TRIM28-202ENST00000341753 C20orf141Q9NUB4 165 aa20.78■□□□□ 0.92
TRIM28-202ENST00000341753 KIAA1549LQ6ZVL6 1849 aa20.78■□□□□ 0.92
TRIM28-202ENST00000341753 IGKV1-8A0A0C4DH67 115 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 A0A1W2PPL8 197 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 TRABD2BA6NFA1 517 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 TEX46H3BTG2 121 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 LATO43561 262 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 RGS11O94810 467 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 AIFM1O95831 613 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 ADRB1P08588 477 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 RAB3BP20337 219 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 PYCR1P32322 319 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 TSPAN5P62079 268 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 SLC9A5Q14940 896 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 GET4Q7L5D6 327 aaPredicted RBP20.77■□□□□ 0.92
TRIM28-202ENST00000341753 FANK1Q8TC84 345 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 AHCYL2Q96HN2 611 aaKnown RBP20.77■□□□□ 0.92
TRIM28-202ENST00000341753 NDC1Q9BTX1 674 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 ZNF436Q9C0F3 470 aaPredicted RBP20.77■□□□□ 0.92
TRIM28-202ENST00000341753 CCDC86Q9H6F5 360 aaKnown RBP20.77■□□□□ 0.92
TRIM28-202ENST00000341753 KLHL28Q9NXS3 571 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 SCP2D1Q9UJQ7 156 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 CDHR4A6H8M9 788 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 TRIM77I1YAP6 450 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 SYT5O00445 386 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 GMDSO60547 372 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 MT-ND5P03915 603 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 LCN1P31025 176 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 ANXA11P50995 505 aaKnown RBP20.77■□□□□ 0.92
TRIM28-202ENST00000341753 MAP2K6P52564 334 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 BLVRAP53004 296 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 BDH1Q02338 343 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 TMEM255AQ5JRV8 349 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms