RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 PCDHA10Q9Y5I2 948 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 MT-CO2P00403 227 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 IFI6P09912 130 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 CDC42P60953 191 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 SCAPQ12770 1279 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 USP45Q70EL2 814 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 LRRC70Q7Z2Q7 622 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 OR2AP1Q8NGE2 309 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 DNMT3LQ9UJW3 386 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ANKUB1A6NFN9 424 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 TMEM200CA6NKL6 621 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 PKMP14618 531 aaKnown RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 SDC4P31431 198 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 COMMD6Q7Z4G1 85 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 THAP6Q8TBB0 222 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 GOT1P17174 413 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 LCP2Q13094 533 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 TAPT1Q6NXT6 567 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 TANKQ92844 425 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 IL17FQ96PD4 163 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 GPR61Q9BZJ8 451 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ZMAT3Q9HA38 289 aaKnown RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 CD1AP06126 327 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 MELTFP08582 738 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 MTHFD2P13995 350 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 CES4AQ5XG92 561 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 TSTD1Q8NFU3 115 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 OR5H6Q8NGV6 325 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 TNFAIP8L1Q8WVP5 186 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ATXN7O15265 892 aaPredicted RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 UBL4AP11441 157 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 SLC11A2P49281 568 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 RPP30P78346 268 aaKnown RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 P2RY14Q15391 338 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF667Q5HYK9 610 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 NADSYN1Q6IA69 706 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 GAREM2Q75VX8 874 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 SPATA2LQ8IUW3 424 aaPredicted RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 FAM160A2Q8N612 972 aaPredicted RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 APOBEC3GQ9HC16 384 aaKnown RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 SDHAF3Q9NRP4 125 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 PRELID3BQ9Y3B1 194 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 RAB40ALP0C0E4 278 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 HJURPQ8NCD3 748 aaPredicted RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 MAPK15Q8TD08 544 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 RAB40AQ8WXH6 277 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 APOLD1Q96LR9 279 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF382Q96SR6 550 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 MYNNQ9NPC7 610 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 COL1A2P08123 1366 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 A0A1W2PRV1 198 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ELOVL7A1L3X0 281 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 OR6C75A6NL08 312 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ABLIM3O94929 683 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 SPATA31C1P0DKV0 1188 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 NME2P22392 152 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 PSMA6P60900 246 aaKnown RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 KCNIP4Q6PIL6 250 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 OR5AP2Q8NGF4 316 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 UBTD2Q8WUN7 234 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 PGAP3Q96FM1 320 aaPredicted RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 CCM2Q9BSQ5 444 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 PCED1AQ9H1Q7 454 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 NXF3Q9H4D5 531 aaKnown RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 KLF2Q9Y5W3 355 aaPredicted RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 PSAT1Q9Y617 370 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 TCRBV16S1A1N1A0A5B0 115 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 EOMESO95936 686 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 STAG3L2P0CL84 134 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 CDC34P49427 236 aaPredicted RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 YOD1Q5VVQ6 348 aaPredicted RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 KDM8Q8N371 416 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 MRPL43Q8N983 215 aaKnown RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 FAM103A1Q9BTL3 118 aaKnown RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 CBSLP0DN79 551 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 FPR1P21462 350 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 LCN1P31025 176 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 CBSP35520 551 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 RANP62826 216 aaKnown RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 KIAA0930Q6ICG6 404 aaPredicted RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 KCNJ9Q92806 393 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 TRMT61BQ9BVS5 477 aaKnown RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 DDIT4Q9NX09 232 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 TCAF2A6NFQ2 919 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 SHISA7A6NL88 538 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 DEDDO75618 318 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 DVL1P1P54792 670 aaPredicted RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 PER3P56645 1201 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 LASP1Q14847 261 aaKnown RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 OR5M10Q6IEU7 315 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 PLPPR4Q7Z2D5 763 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 LXNQ9BS40 222 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ACOXLQ9NUZ1 547 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 AHSPQ9NZD4 102 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 FEZF1A0PJY2 475 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 AKR7A3O95154 331 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ASGR2P07307 311 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ATP5C1P36542 298 aaKnown RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ACSM1Q08AH1 577 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 OR56A4Q8NGH8 313 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms