RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 NPIPA3F8WFD2 350 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 MANBAO00462 879 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 BCHEP06276 602 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 EFNA3P52797 238 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 CTF1Q16619 201 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 HNRNPA1L2Q32P51 320 aaKnown RBP3.78□□□□□ -1.8
USH2A-201ENST00000307340 AMIGO2Q86SJ2 522 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 LAS2Q8IYD9 372 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 OR2A12Q8NGT7 310 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 OR10T2Q8NGX3 314 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 OR6F1Q8NGZ6 308 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 BABAM2Q9NXR7 383 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 AIFM1O95831 613 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 PLGP00747 810 aaPredicted RBP3.78□□□□□ -1.8
USH2A-201ENST00000307340 NT5EP21589 574 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 WDR5P61964 334 aaKnown RBP3.78□□□□□ -1.8
USH2A-201ENST00000307340 H3F3AP84243 136 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 THEM4Q5T1C6 240 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 TMEM225Q6GV28 225 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 SIX5Q8N196 739 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 SLC37A3Q8NCC5 494 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 TMEM203Q969S6 136 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 PINX1Q96BK5 328 aaKnown RBP3.78□□□□□ -1.8
USH2A-201ENST00000307340 FKRPQ9H9S5 495 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 POLDIP2Q9Y2S7 368 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 LCTP09848 1927 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 B4DEV8 164 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 TXNDC12O95881 172 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 NUMBP49757 651 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 ENTPD1P49961 510 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 KDM4DQ6B0I6 523 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 TEX19Q8NA77 164 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 GALNT11Q8NCW6 608 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 ASB12Q8WXK4 309 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 POMT2Q9UKY4 750 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 TMEM131Q92545 1883 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 DENND4CQ5VZ89 1909 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 SNAP29O95721 258 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 JUNP05412 331 aaKnown RBP3.78□□□□□ -1.8
USH2A-201ENST00000307340 RAB6AP20340 208 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 SEMA3BQ13214 749 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 NSDHLQ15738 373 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 TMEM198Q66K66 360 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 OVCH1Q7RTY7 1134 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 CMC1Q7Z7K0 106 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 STK35Q8TDR2 534 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 ASB11Q8WXH4 323 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 RBM14Q96PK6 669 aaKnown RBP3.78□□□□□ -1.8
USH2A-201ENST00000307340 OR10A5Q9H207 317 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 OR10A2Q9H208 303 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 IL26Q9NPH9 171 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 ZNF281Q9Y2X9 895 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 A0A1W2PPL8 197 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 SLC22A23A1A5C7 686 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 EPHX1P07099 455 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 HCKP08631 526 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 ZNF806P0C7X5 589 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 ASCL1P50553 236 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 OR4D2P58180 307 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 SHC2P98077 582 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 CDK5R2Q13319 367 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 TMEM30BQ3MIR4 351 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 NAXDQ8IW45 347 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 ELMOD2Q8IZ81 293 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 GPX8Q8TED1 209 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 ZNF431Q8TF32 576 aaPredicted RBP3.78□□□□□ -1.8
USH2A-201ENST00000307340 BORCS8Q96FH0 119 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 TSNAXQ99598 290 aaKnown RBP3.78□□□□□ -1.8
USH2A-201ENST00000307340 ELF4Q99607 663 aaPredicted RBP3.78□□□□□ -1.8
USH2A-201ENST00000307340 B3GNT5Q9BYG0 378 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 PNO1Q9NRX1 252 aaKnown RBP3.78□□□□□ -1.8
USH2A-201ENST00000307340 CPQQ9Y646 472 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 ERI3O43414 337 aaKnown RBP3.78□□□□□ -1.8
USH2A-201ENST00000307340 CLRN1P58418 232 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 TMEM41BQ5BJD5 291 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 MOB1BQ7L9L4 216 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 RLIMQ9NVW2 624 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 SIPA1L1O43166 1804 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 NCKAP5O14513 1909 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 TMEM72A0PK05 275 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 C5orf51A6NDU8 294 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 TRIM77I1YAP6 450 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 NCR1O76036 304 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 FPR3P25089 353 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 DLK1P80370 383 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 UBXN2BQ14CS0 331 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 Q499Y3 187 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 CGGBP1Q9UFW8 167 aaPredicted RBP3.78□□□□□ -1.8
USH2A-201ENST00000307340 COPS3Q9UNS2 423 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 KLK8O60259 260 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 GIPP09681 153 aaPredicted RBP3.78□□□□□ -1.8
USH2A-201ENST00000307340 SBK2P0C263 348 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 ALAS2P22557 587 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 SLC2A5P22732 501 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 GALNSP34059 522 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 DCTP40126 519 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 FLI1Q01543 452 aaPredicted RBP3.78□□□□□ -1.8
USH2A-201ENST00000307340 GUK1Q16774 197 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 PNLIPRP3Q17RR3 467 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 SPIN3Q5JUX0 258 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms