RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 TRAV27A0A087WT01 109 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 TRBV11-1A0A0K0K1C0 115 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 ARRDC5A6NEK1 342 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 GTPBP1O00178 669 aaKnown RBP15.15■□□□□ 0.02
USP4-201ENST00000265560 ENTPD6O75354 484 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 LYPD3O95274 346 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 ADRA2AP08913 450 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 PAX7P23759 505 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 GALNSP34059 522 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 TUBA4AP68366 448 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 SLC35A2P78381 396 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 IL11RAQ14626 422 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 FCRLBQ6BAA4 426 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 SMARCD3Q6STE5 483 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 CASP12Q6UXS9 341 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 OMA1Q96E52 524 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 CMKLR1Q99788 373 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 WDR77Q9BQA1 342 aaPredicted RBP15.15■□□□□ 0.02
USP4-201ENST00000265560 UBQLN4Q9NRR5 601 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 SCN3BQ9NY72 215 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 PCDHGA5Q9Y5G8 931 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 SCDO00767 359 aa15.14■□□□□ 0.01
USP4-201ENST00000265560 SLC2A10O95528 541 aa15.14■□□□□ 0.01
USP4-201ENST00000265560 KLK3P07288 261 aaPredicted RBP15.14■□□□□ 0.01
USP4-201ENST00000265560 KLHL26Q53HC5 615 aa15.14■□□□□ 0.01
USP4-201ENST00000265560 BICRALQ6AI39 1079 aa15.14■□□□□ 0.01
USP4-201ENST00000265560 MBOAT2Q6ZWT7 520 aa15.14■□□□□ 0.01
USP4-201ENST00000265560 GPR141Q7Z602 305 aa15.14■□□□□ 0.01
USP4-201ENST00000265560 B3GNT7Q8NFL0 401 aa15.14■□□□□ 0.01
USP4-201ENST00000265560 SAMD8Q96LT4 415 aa15.14■□□□□ 0.01
USP4-201ENST00000265560 BLOC1S6Q9UL45 172 aa15.14■□□□□ 0.01
USP4-201ENST00000265560 LOXL2Q9Y4K0 774 aa15.14■□□□□ 0.01
USP4-201ENST00000265560 IL33O95760 270 aa15.14■□□□□ 0.01
USP4-201ENST00000265560 STSP08842 583 aa15.14■□□□□ 0.01
USP4-201ENST00000265560 SAGP10523 405 aaPredicted RBP15.14■□□□□ 0.01
USP4-201ENST00000265560 GABRB1P18505 474 aa15.14■□□□□ 0.01
USP4-201ENST00000265560 PEX19P40855 299 aa15.14■□□□□ 0.01
USP4-201ENST00000265560 NUP107P57740 925 aa15.14■□□□□ 0.01
USP4-201ENST00000265560 FBXW4P57775 412 aa15.14■□□□□ 0.01
USP4-201ENST00000265560 SLC35F1Q5T1Q4 408 aa15.14■□□□□ 0.01
USP4-201ENST00000265560 LRRC17Q8N6Y2 441 aa15.14■□□□□ 0.01
USP4-201ENST00000265560 OR13C2Q8NGS9 318 aa15.14■□□□□ 0.01
USP4-201ENST00000265560 TSSK6Q9BXA6 273 aa15.14■□□□□ 0.01
USP4-201ENST00000265560 RBM38Q9H0Z9 239 aaKnown RBP15.14■□□□□ 0.01
USP4-201ENST00000265560 POLE3Q9NRF9 147 aa15.14■□□□□ 0.01
USP4-201ENST00000265560 SNX5Q9Y5X3 404 aa15.14■□□□□ 0.01
USP4-201ENST00000265560 KMT2EQ8IZD2 1858 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 FRG2CA6NGY1 282 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 NUDT14O95848 222 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 TCEA1P23193 301 aaKnown RBP15.13■□□□□ 0.01
USP4-201ENST00000265560 MASP1P48740 699 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 BIKQ13323 160 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 TOMM34Q15785 309 aaPredicted RBP15.13■□□□□ 0.01
USP4-201ENST00000265560 SNAPC1Q16533 368 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 B3GLCTQ6Y288 498 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 GGHQ92820 318 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 LOXL4Q96JB6 756 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 COPS4Q9BT78 406 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 YTHDF1Q9BYJ9 559 aaKnown RBP15.13■□□□□ 0.01
USP4-201ENST00000265560 CXorf56Q9H5V9 222 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.13■□□□□ 0.01
USP4-201ENST00000265560 PCDHGA10Q9Y5H3 936 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 CACNA1CQ13936 2221 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 HCRTR2O43614 444 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 IFI6P09912 130 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 CCDC159P0C7I6 412 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 ITPKBP27987 946 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 INSM1Q01101 510 aaPredicted RBP15.13■□□□□ 0.01
USP4-201ENST00000265560 MC2RQ01718 297 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 TSPAN31Q12999 210 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 CPEB4Q17RY0 729 aaKnown RBP eCLIP15.13■□□□□ 0.01
USP4-201ENST00000265560 RAB11FIP2Q7L804 512 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 SUMF1Q8NBK3 374 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 GNPDA2Q8TDQ7 276 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 LPAR4Q99677 370 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 WARS2Q9UGM6 360 aaKnown RBP15.13■□□□□ 0.01
USP4-201ENST00000265560 TPRKBQ9Y3C4 175 aa15.13■□□□□ 0.01
USP4-201ENST00000265560 A0A0B4J2E0 115 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 A0A1B0GX12 115 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 A0A1W2PNU3 283 aaPredicted RBP15.12■□□□□ 0.01
USP4-201ENST00000265560 VSTM2BA6NLU5 285 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 LCKP06239 509 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 PCSK6P29122 969 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 MRPL14Q6P1L8 145 aaKnown RBP15.12■□□□□ 0.01
USP4-201ENST00000265560 CPEB2Q7Z5Q1 589 aaKnown RBP15.12■□□□□ 0.01
USP4-201ENST00000265560 ZBTB46Q86UZ6 589 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 NFAM1Q8NET5 270 aaPredicted RBP15.12■□□□□ 0.01
USP4-201ENST00000265560 ZNF559Q9BR84 538 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 DUSP21Q9H596 190 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 PARD6AQ9NPB6 346 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 RPS6KB2Q9UBS0 482 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 TESQ9UGI8 421 aaKnown RBP15.12■□□□□ 0.01
USP4-201ENST00000265560 GPN3Q9UHW5 284 aaPredicted RBP15.12■□□□□ 0.01
USP4-201ENST00000265560 CFL2Q9Y281 166 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 ZNF806P0C7X5 589 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 CRYZQ08257 329 aaKnown RBP15.12■□□□□ 0.01
USP4-201ENST00000265560 POGLUT1Q8NBL1 392 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 OR4Q3Q8NH05 313 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 TEX47Q8TBZ9 253 aa15.12■□□□□ 0.01
USP4-201ENST00000265560 BPIFA2Q96DR5 249 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms