RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 PRRT2Q7Z6L0 340 aaPredicted RBP13.69□□□□□ -0.22
PTPRA-201ENST00000216877 STOML3Q8TAV4 291 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 ECHDC3Q96DC8 303 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 PRDM5Q9NQX1 630 aaPredicted RBP13.69□□□□□ -0.22
PTPRA-201ENST00000216877 FRS3O43559 492 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 SLC2A10O95528 541 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 NTN1O95631 604 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 CLTBP09497 229 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 PRF1P14222 555 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 OR1G1P47890 313 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 AP3S2P59780 193 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 HSPB3Q12988 150 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 PLA2G7Q13093 441 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 SERINC3Q13530 473 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 ZNF630Q2M218 657 aaPredicted RBP13.69□□□□□ -0.22
PTPRA-201ENST00000216877 ZNF385BQ569K4 471 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 OR7E24Q6IFN5 339 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 HTR3DQ70Z44 454 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 OR2W3Q7Z3T1 314 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 OR52N2Q8NGI0 321 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 OR51Q1Q8NH59 317 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 LGALS14Q8TCE9 139 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 RFKQ969G6 155 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 ISOC2Q96AB3 205 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 PAAF1Q9BRP4 392 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 PIGMQ9H3S5 423 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 FZD3Q9NPG1 666 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 URADA6NGE7 173 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 UBXN7O94888 489 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 PRAMEF12O95522 483 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 CPT2P23786 658 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 NOS3P29474 1203 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 CTNNB1P35222 781 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 PTH2RP49190 550 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 STXBP1P61764 594 aaKnown RBP13.69□□□□□ -0.22
PTPRA-201ENST00000216877 CACNG1Q06432 222 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 PDZD11Q5EBL8 140 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 TAPT1Q6NXT6 567 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 TSSK4Q6SA08 328 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 C16orf59Q7L2K0 433 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 CPOQ8IVL8 374 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 NAXDQ8IW45 347 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 OR6V1Q8N148 313 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 CAMKVQ8NCB2 501 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 OR8J2Q8NGG1 315 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 FCAMRQ8WWV6 532 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 VRK1Q99986 396 aaPredicted RBP13.69□□□□□ -0.22
PTPRA-201ENST00000216877 WRAP53Q9BUR4 548 aaKnown RBP13.69□□□□□ -0.22
PTPRA-201ENST00000216877 SLITRK2Q9H156 845 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 GPATCH2Q9NW75 528 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 SIRT4Q9Y6E7 314 aaPredicted RBP13.69□□□□□ -0.22
PTPRA-201ENST00000216877 M0R036 132 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 OR2T1O43869 369 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 KRT33AO76009 404 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 NR2F1P10589 423 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 FLT3LGP49771 235 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 MTAPQ13126 283 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 RPE65Q16518 533 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 ACSM3Q53FZ2 586 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 C11orf96Q7Z7L8 435 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 LMNTD1Q8N9Z9 388 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 TMEM19Q96HH6 336 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 TCEAL7Q9BRU2 100 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 GAREM1Q9H706 876 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 ASIC5Q9NY37 505 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 TESQ9UGI8 421 aaKnown RBP13.68□□□□□ -0.22
PTPRA-201ENST00000216877 OPN4Q9UHM6 478 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 PCDHB1Q9Y5F3 818 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 OR6C76A6NM76 312 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 PYCARD-AS1I3L0S3 204 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 ZNF197O14709 1029 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 MAGEB4O15481 346 aaPredicted RBP13.68□□□□□ -0.22
PTPRA-201ENST00000216877 MTNR1BP49286 362 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 H2BFSP57053 126 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 E2F1Q01094 437 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 OR7A5Q15622 319 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 PRRT3Q5FWE3 981 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 GLDNQ6ZMI3 551 aaPredicted RBP13.68□□□□□ -0.22
PTPRA-201ENST00000216877 ETV3LQ6ZN32 361 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 C20orf24Q9BUV8 137 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 ALG8Q9BVK2 526 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 STOX2Q9P2F5 926 aaPredicted RBP13.68□□□□□ -0.22
PTPRA-201ENST00000216877 KLF15Q9UIH9 416 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 A0A1W2PPE3 182 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 MEX3AA1L020 520 aaKnown RBP13.68□□□□□ -0.22
PTPRA-201ENST00000216877 DPM1O60762 260 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 TXNDC12O95881 172 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 SNRNP70P08621 437 aaKnown RBP13.68□□□□□ -0.22
PTPRA-201ENST00000216877 GNSP15586 552 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 S100A2P29034 98 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 PTGER1P34995 402 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 SREBF2Q12772 1141 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 TMEM201Q5SNT2 666 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 OR52W1Q6IF63 320 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 C12orf40Q86WS4 652 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 OR5W2Q8NH69 310 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 FAM46AQ96IP4 442 aaKnown RBP13.68□□□□□ -0.22
PTPRA-201ENST00000216877 WFDC6Q9BQY6 131 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 ISYNA1Q9NPH2 558 aa13.68□□□□□ -0.22
PTPRA-201ENST00000216877 OR2S2Q9NQN1 319 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms